Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P18
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45) 31 0.57
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_15253| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 27 9.2
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 27 9.2
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_49007| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=4.9) 27 9.2
SB_7547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_473| Best HMM Match : Ribosomal_60s (HMM E-Value=0.97) 27 9.2
>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +3
Query: 180 NEAIELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLM 359
+E +LI L ER CLWD EY K +R +A EEI E + + V +K K+ L
Sbjct: 35 HEVEQLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEIAEQMGITLNDVKSKIKS----LR 90
Query: 360 SKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFL-DAVFVYKTKSSQKVDSRLSDEDNAT 536
S+ R+ Y +R N V +I L+FL D + + + S +V ++ D
Sbjct: 91 SQLG---REIY--KIRTSENYVPIWIFWHKLQFLADVMREGRKRDSMRVSMAIASPDRVP 145
Query: 537 E 539
+
Sbjct: 146 D 146
>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +3
Query: 171 PAKNEAIELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSV 350
PA E G VRE+K +C + + + W + + D H ++++ K+
Sbjct: 392 PASESEFEYSGWVREQKS----KCRKIQKGVQGMNNWSPL-NLKDTTTHSLDSEGKDCEA 446
Query: 351 LLMSKKWTNIRDAYVKSLRMGRNRV 425
SKKWT + K L+ ++V
Sbjct: 447 SFKSKKWTKEQRRKCKHLQHSSHQV 471
>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
Length = 1038
Score = 31.5 bits (68), Expect = 0.57
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -3
Query: 534 LRCPRL-RVDCLLFGRT*FCKRTQHQETPKPRRVCTASPGSSPSSVT*RKRLVCSSIFLT 358
L C R+ + ++FG + + E +PR + TAS G PS + K LV +I ++
Sbjct: 181 LACARIGAIHSVVFGGFAAAELARRIEHAEPRVIVTASCGIEPSRIVTYKPLVDEAIKIS 240
Query: 357 SVEPT 343
S +P+
Sbjct: 241 SFKPS 245
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 462 DAVFVYKTKSSQKVDSRLSDEDNATEDSIEWLNEVYVDESAVXEPP 599
+A+F +K S+ ++ LSD DN + +++ + + D + + EPP
Sbjct: 1445 NAMFGHKKASNVEIGQALSDIDNMGDLNVDNIKFIVQDPTTIDEPP 1490
>SB_15253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 232 SHKHFLSRTNPINSMASFFAGTTLS 158
SH+H+ S N IN+ A FA TTLS
Sbjct: 233 SHRHYSSGMNAINASAQPFAVTTLS 257
>SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 153 DSESVVPAKNEAIELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNK 332
DS V +N +L+ V+ R + RN YD L W + V DP N K
Sbjct: 199 DSLDWVQNRN-VYDLLDWVQNRDVYDSLDWVQNRNVYDSLD-WVQNRNVYDPLDWVQNRK 256
Query: 333 HKNKSVLLMSKKWT-NIRDAY 392
K+K L + WT ++D Y
Sbjct: 257 EKHKQPLQRFELWTPGLQDQY 277
>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Frame = +3
Query: 309 NFHRVNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIH----AEALEFLDAVFV 476
NF R N+H + L +K Y K ++GR+ ++ +H + F++ +
Sbjct: 800 NFQRFQNEHNHLKEFLAKQKGNAEHLCYSKPKKIGRDYIEGLLHKSGKKQLYSFVEFIQE 859
Query: 477 YKTKSSQKVDSRLSDEDNATEDSIEWLNEVY 569
K + S L D + ++VY
Sbjct: 860 CKDRCSASTPYLLKDVPKCVSRVYKMCSDVY 890
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 231 DRRCTEYRNKYDRLKAWE-----EICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIRDAYV 395
+R+ TE N +LK + E CE L HR+ N+ NK K+ ++
Sbjct: 383 NRQLTEELNNERKLKVKDAKEHFEKCEFLTKEMHRLKNEWSNKE--KEYKRMATEQEKES 440
Query: 396 KSLRMGRNRVK 428
KSLR N+++
Sbjct: 441 KSLRKKNNQLE 451
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 144 RMSDSESVVPAKNEAIELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICE 296
R+ D S K A+ + + RE + ++ E ++Y R W E CE
Sbjct: 686 RVDDQLSAANQKWNALNMAVIYRENRL--EQLAREIEDEYQRFDKWRESCE 734
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 141 IRMSDSESVVPAKNEAIELIGLVRERKCLWDRRCTEYRNK 260
IR D SV+ K+ EL+ + LW CT YR K
Sbjct: 1259 IRARDLTSVIENKSIYQELVAVKSLLNILWYHECTVYRLK 1298
>SB_49007| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=4.9)
Length = 312
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 150 SDSESVVPAKNEAIELIG--LVRERKCLWDRRCTEYRNKYDRLKAWEEI 290
++++ V A N + ++G LVR K + + N+YD K +EE+
Sbjct: 82 TETKPVGQANNTVVNIVGRNLVRRLKITFAGETLQDTNRYDVFKTYEEL 130
>SB_7547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 494 GGLSFVNEHSIKKLQSLGVYVRLHPVPP 411
GG FV H+I+ L + V+V ++PVPP
Sbjct: 40 GGRLFVT-HAIENLLYISVHVWVYPVPP 66
>SB_473| Best HMM Match : Ribosomal_60s (HMM E-Value=0.97)
Length = 757
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 141 IRMSDSESVVPAKNEAIELIG--LVRERKCLWDRRCTEYRNKYDRLKAWEEI 290
+R+ S+ N + +G LV K + R +Y N+YD K +EE+
Sbjct: 59 LRVGFDLSISGQANNTVVNVGRNLVSRLKITFARETLQYTNRYDVFKTYEEL 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,806,129
Number of Sequences: 59808
Number of extensions: 370046
Number of successful extensions: 1063
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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