Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P18
         (617 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box p...    32   1.9  
BC005116-1|AAH05116.1|  709|Homo sapiens structure specific reco...    32   1.9  

>M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box
           protein.
          Length = 709

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 201 GLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNI 380
           G+ +E+K  WDR+  + R  Y+  KA +E       +  R  +K K K  + M KK T  
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYE--KAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPS 644

Query: 381 RDAYVKS 401
           R +  KS
Sbjct: 645 RGSSSKS 651


>BC005116-1|AAH05116.1|  709|Homo sapiens structure specific
           recognition protein 1 protein.
          Length = 709

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 201 GLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNI 380
           G+ +E+K  WDR+  + R  Y+  KA +E       +  R  +K K K  + M KK T  
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYE--KAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPS 644

Query: 381 RDAYVKS 401
           R +  KS
Sbjct: 645 RGSSSKS 651


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,623,594
Number of Sequences: 237096
Number of extensions: 1834013
Number of successful extensions: 3913
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3904
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)