Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P18
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81449-3|CAB03761.1|  300|Caenorhabditis elegans Hypothetical pr...    38   0.004
AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical ...    37   0.013
Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z83219-6|CAB05696.5|  351|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    24   5.3  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical pr...    27   8.1  
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    27   8.1  
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    27   8.1  
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    27   8.1  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81449-3|CAB03761.1|  300|Caenorhabditis elegans Hypothetical
           protein C46F11.3 protein.
          Length = 300

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
 Frame = +3

Query: 144 RMSDSESVVPAKNEAI-ELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHR 320
           R+  S  +  A+ E + ++I  VR+R  LWD+R   +RN     +AW+++   L+     
Sbjct: 118 RVRQSTKIDYAEPEKVYDIIYAVRKRPILWDQRLICHRNSNLSRRAWDQL--DLELGIDE 175

Query: 321 VNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKT 485
                + K +      W + RD +V ++      ++ +I+A+ALEF   +  ++T
Sbjct: 176 EYPLARRKQI------WKSKRDYFVSAVNAA--NLRKWIYADALEFYRPMINFRT 222


>AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical
           protein H20J04.3 protein.
          Length = 312

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = +3

Query: 189 IELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKK 368
           + LI  VR  +CL+D    +YRN   + + W+ +  VL   F        +    ++S +
Sbjct: 8   LRLIEAVRHSRCLFDNTDRQYRNTEYKNRVWQRLVTVL--GF--------DGDPRMLSAR 57

Query: 369 WTNIRDAYVKSLRMGR--NRVKPYIHAEALEFLD 464
           W  +RD Y K  R  +  N    + + + L FLD
Sbjct: 58  WKQLRDKYGKEKRKQKYGNEKSSWQYFKHLHFLD 91



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 26/81 (32%), Positives = 36/81 (44%)
 Frame = +3

Query: 195 LIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWT 374
           LI  VR   CL+D R  +YR+   R +AW  I + L              +V  + K+W 
Sbjct: 123 LILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKL----------RYPGTVPSIYKQWK 172

Query: 375 NIRDAYVKSLRMGRNRVKPYI 437
             RD YV+  R  RN   P +
Sbjct: 173 KHRDRYVREKRRLRNLGDPNV 193


>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +3

Query: 195 LIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWT 374
           LI  VR+  CL++       +  +R + WE I + +DPN           +     K+W 
Sbjct: 11  LINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNIDPNC----------AAEFAKKRWL 60

Query: 375 NIRDAYVKSLRM 410
            +RD Y K L++
Sbjct: 61  QLRDRYRKELKI 72


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 333 AC-CLLCGS*GLAPHRSPPKPSACRICSYTLYISCPTNIFFHELTRSIL 190
           AC CL+CGS G  P  S     AC  C+ T +  C T    H+  R IL
Sbjct: 467 ACMCLVCGSIGKGPEGS---MVACSNCAQTYHTYCVT---LHDKFRGIL 509


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 333 AC-CLLCGS*GLAPHRSPPKPSACRICSYTLYISCPTNIFFHELTRSIL 190
           AC CL+CGS G  P  S     AC  C+ T +  C T    H+  R IL
Sbjct: 467 ACMCLVCGSIGKGPEGS---MVACSNCAQTYHTYCVT---LHDKFRGIL 509


>Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = +3

Query: 357 MSKKWTNIRDAYVKSLRMGRNRV------KPYIHAEALEFLDAVFVYKTKSSQKVDSRLS 518
           + +KW ++RD YV+  +  + +       K Y +   + FLD    ++ +  QK D   S
Sbjct: 66  LERKWKHMRDKYVRLRKQDKQKAPIKKTNKWYNYYHKMSFLDPYVEHRNRKRQK-DYLNS 124

Query: 519 DEDNATEDSIEWLNEVYVDE 578
           +  +  +D   +L+ + V E
Sbjct: 125 NTPDFLDDDTAFLDGLSVKE 144


>Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = +3

Query: 357 MSKKWTNIRDAYVKSLRMGRNRV------KPYIHAEALEFLDAVFVYKTKSSQKVDSRLS 518
           + +KW ++RD YV+  +  + +       K Y +   + FLD    ++ +  QK D   S
Sbjct: 66  LERKWKHMRDKYVRLRKQDKQKAPIKKTNKWYNYYHKMSFLDPYVEHRNRKRQK-DYLNS 124

Query: 519 DEDNATEDSIEWLNEVYVDE 578
           +  +  +D   +L+ + V E
Sbjct: 125 NTPDFLDDDTAFLDGLSVKE 144


>AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical
           protein ZC416.1 protein.
          Length = 139

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = +3

Query: 189 IELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKK 368
           I LI  V+ R  L+D+    Y     R  AW EI E L+       ++H       +  +
Sbjct: 51  IRLIAEVKARPFLYDQSDEGYNLLSWRNSAWNEIAENLE-----TTSEH-------VKTR 98

Query: 369 WTNIRDAYVKSLRMGR--NRVKPYIHAEALEFLDA 467
           W  +RD Y K  +  R   +   ++    L+F+ A
Sbjct: 99  WKTLRDRYKKEEKKERVSKKASSWVFQRPLKFIQA 133


>Z83219-6|CAB05696.5|  351|Caenorhabditis elegans Hypothetical
           protein C31C9.4 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 261 YDRLKAWEEICEV-LD---PNFHRVNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVK 428
           YD L   EE+ ++ LD   P    +         L    +W N + A+++S +  R  ++
Sbjct: 205 YDILDCLEEVTDISLDLYQPYLEGMRRVTDGMEDLFELDQWKNAKTAHIESTKYFRTEIE 264

Query: 429 PYIHAEAL 452
            ++H E++
Sbjct: 265 HFLHFESI 272


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 24.2 bits (50), Expect(2) = 5.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 384 DAYVKSLRMGRNRVKPYIHAEAL-EFLDAVFVYKTKSS-QKVDSRL 515
           D++VK +     R   YIH+ +L    +AV     K+S QK D  L
Sbjct: 133 DSFVKKIEPNERRATQYIHSNSLSRSNEAVPPGNVKTSQQKADHHL 178



 Score = 22.2 bits (45), Expect(2) = 5.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 324 NNKHKNKSVLLMSKKWTN 377
           N KHK KSV  + KK  N
Sbjct: 75  NEKHKRKSVQQVVKKVVN 92


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 567 YVDESAVXEPPPKKP 611
           Y DE  V EPPPK+P
Sbjct: 634 YEDEERVREPPPKRP 648


>U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical
           protein T08H10.1 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 504 DSRLSDEDNATEDSIEWLNEVYVDESAVXEP 596
           D +LSDED  T +SIE    +++ + AV  P
Sbjct: 283 DFKLSDEDMHTLNSIETRTRLFIADFAVKHP 313


>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = +3

Query: 330 KHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDS 509
           K++N++ +     ++  R+   KS     + +KP  +A+ +  L A F+++TK   K+D 
Sbjct: 748 KNRNRATI-RRPGYSRKRNEMEKSGGHDDDSLKPLTYADIITRLVARFIHQTKKDMKMDG 806

Query: 510 RLSDEDNATEDSIEWL 557
              D+ +  +  I  L
Sbjct: 807 VNEDDLHEIKQDISSL 822


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = +3

Query: 330 KHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDS 509
           K++N++ +     ++  R+   KS     + +KP  +A+ +  L A F+++TK   K+D 
Sbjct: 728 KNRNRATI-RRPGYSRKRNEMEKSGGHDDDSLKPLTYADIITRLVARFIHQTKKDMKMDG 786

Query: 510 RLSDEDNATEDSIEWL 557
              D+ +  +  I  L
Sbjct: 787 VNEDDLHEIKQDISSL 802


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = +3

Query: 330 KHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDS 509
           K++N++ +     ++  R+   KS     + +KP  +A+ +  L A F+++TK   K+D 
Sbjct: 728 KNRNRATI-RRPGYSRKRNEMEKSGGHDDDSLKPLTYADIITRLVARFIHQTKKDMKMDG 786

Query: 510 RLSDEDNATEDSIEWL 557
              D+ +  +  I  L
Sbjct: 787 VNEDDLHEIKQDISSL 802


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = +3

Query: 252 RNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKP 431
           +NK +  K W+++ + +     R+  K  NK    M +K++      +K   +   +   
Sbjct: 315 KNKQEPPKRWQQVIQEIKDESFRIKGKKNNKE--RMKRKFSKFVST-MKEAGLNPRKALN 371

Query: 432 YIHAEALEFLDAVFVYK---TKSSQKVDSRLSDEDNATEDSIEWLNE 563
            +  E L   D +   K    K  ++++ R+S +D    + I+ + E
Sbjct: 372 TMGMEDLFEDDPILSEKEMDLKDRKEMEERMSPDDKIMHEPIKLIRE 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,468
Number of Sequences: 27780
Number of extensions: 289113
Number of successful extensions: 947
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)