Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P18
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 452 QSLGVYVRLHPVPPHPQ*LNVSVSYVRP 369
           + LGV+ R  P+ PH   LN+ V   RP
Sbjct: 105 RGLGVFERTEPLSPHL--LNLEVERWRP 130


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 31  SCSNSYKTAFCLLNNERI 84
           +C N + T +CL   ER+
Sbjct: 138 TCGNPWNTRYCLTPTERL 155


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 31  SCSNSYKTAFCLLNNERI 84
           +C N + T +CL   ER+
Sbjct: 191 TCGNPWNTRYCLTPTERL 208


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 282 PKPSACRICSYTLYISCPTNIFFHELTRSI 193
           P  S       +L +SCP N+  + L R +
Sbjct: 144 PNGSVLYSIRISLTLSCPMNLKLYPLDRQV 173


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 282 PKPSACRICSYTLYISCPTNIFFHELTRSI 193
           P  S       +L +SCP N+  + L R +
Sbjct: 144 PNGSVLYSIRISLTLSCPMNLKLYPLDRQV 173


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +3

Query: 378 IRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDSRLSDEDNAT 536
           IRD+ VK+L    NR+         + ++ +F+     +    +  +D+ N T
Sbjct: 592 IRDSKVKTLDASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLT 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,289
Number of Sequences: 438
Number of extensions: 3929
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)