Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P16
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   6.6  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   6.6  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 313 LWLKYARGKLQNLNFYSYKIAKLKLYYIEIKKEKVAKLSSHLFLQKRTINYLLA 152
           L+L   + + Q +  +   +  L +  I  K  K   L+SHLFLQ   IN++++
Sbjct: 650 LYLNDKKSRSQGMRKFDLNLELLMIKSIIFKNGK--SLNSHLFLQIPNINFIVS 701


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 697 FNRAPNDFQCEGSGSTVLLIADILEHQ*PLIIGWAVCSSAIAV 569
           F++ P +   E   S + L     +   PL++  AVC +AIA+
Sbjct: 69  FHQLPKETHIEFRNSLLQLFLAAKDSPRPLLVSLAVCMAAIAL 111


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 240 FITLK*RKKKWQSSVAICFYKKEL*IIYWHKRLT 139
           FI LK + KKW  S+ IC   K L  +   KRL+
Sbjct: 54  FINLKYQSKKWLYSLVIC---KSLIALLGRKRLS 84


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 273 ISIHIKLPN*SFITLK*RKKKWQSSVAICFYKKEL*IIYWHKRLT-DVTVHFLISNI 106
           + + I+LPN S  T++       +S+ + +YK EL +  W K L  DV    L SN+
Sbjct: 337 LKLPIQLPNTSTETVQLENNDPLNSIGLPYYKDEL-LSSWSKYLIFDVGKPILDSNL 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,860
Number of Sequences: 5004
Number of extensions: 45490
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)