Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P16
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11206| Best HMM Match : DUF1530 (HMM E-Value=4.9) 30 1.7
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7) 30 2.3
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057) 29 3.0
SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94) 29 4.0
SB_59100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07) 29 5.3
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_26561| Best HMM Match : HTH_10 (HMM E-Value=2.1) 29 5.3
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_15027| Best HMM Match : KIX (HMM E-Value=2) 29 5.3
SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9) 29 5.3
SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_36340| Best HMM Match : eRF1_3 (HMM E-Value=3.8) 29 5.3
SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_10494| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5) 29 5.3
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_11206| Best HMM Match : DUF1530 (HMM E-Value=4.9)
Length = 271
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAKLKLYYI-EIKKEKVAKLSSHLFLQKRTINYLL--AQETNR 137
KY + L+ L+ YK K YI E+ ++ KLS+ F+ +T++YL+ A R
Sbjct: 170 KYIQEALRQLSDKEVYKETKYLTQYITELVNRRIRKLSADGFIDDKTLDYLIINAAFVGR 229
Query: 136 CHCTFSNF*HQKSLSLWANI 77
F H SL L+ I
Sbjct: 230 MLFLFHEELHSDSLYLFGRI 249
>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
Length = 535
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLLAQETNR 137
KY + L+ L+ YK K L Y E+ +V KLSS F+ +T++YL+ R
Sbjct: 292 KYNQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSSDGFIDDKTLDYLIINSKPR 349
>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
Length = 643
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 519 LVLLDACTVSSTDKLLRTAMADEHTAH 599
L +LDA + S+D+ L T DEH+AH
Sbjct: 406 LTVLDAKGLKSSDEALLTVKEDEHSAH 432
>SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)
Length = 472
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YK-IAKLKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK I L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 50 KYIQEALRQLSDKEVYKAITDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 101
>SB_59100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 5 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 56
>SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)
Length = 424
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 644 EYS*TAAFTLEVIRSSIKKGPLIXLGK 724
EYS TLEV+ +KKGP++ + K
Sbjct: 346 EYSSEKTKTLEVVEKMLKKGPVLDINK 372
>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 183 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 234
>SB_26561| Best HMM Match : HTH_10 (HMM E-Value=2.1)
Length = 315
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 261 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 312
>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 282 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 333
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 521 KYIQEVLRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 572
>SB_15027| Best HMM Match : KIX (HMM E-Value=2)
Length = 547
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 196 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 247
>SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9)
Length = 456
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + +L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 220 KYIQEELRQLSDKEVYKETKDLTQYITELVNGRVRKLSADGFIDDKTLDYLI 271
>SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 181 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 232
>SB_36340| Best HMM Match : eRF1_3 (HMM E-Value=3.8)
Length = 100
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 5 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 56
>SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 200 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 251
>SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 134 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 185
>SB_10494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 5 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 56
>SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5)
Length = 422
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 184 KYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 235
>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 924 KYIQEVLRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLI 975
>SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 304 KYARGKLQNLNFYS-YKIAK-LKLYYIEIKKEKVAKLSSHLFLQKRTINYLL 155
KY + L+ L+ YK K L Y E+ +V KLS+ F+ +T++YL+
Sbjct: 5 KYIQEALRQLSDKEVYKETKDLTQYIRELVNRRVRKLSADGFIDDKTLDYLI 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,191,397
Number of Sequences: 59808
Number of extensions: 346924
Number of successful extensions: 774
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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