Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P16
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 669 HWKSFGARLKKDPSXRSG 722
           HW   G RL  +PS R G
Sbjct: 25  HWFRKGLRLHDNPSLREG 42


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 591 YARLPLQSSKACRSTRQYKRPGEPGPRAIRGR 496
           Y+R   +  K+ ++ R+Y++ GE      R R
Sbjct: 272 YSRSREREQKSYKNEREYRKYGETSKERSRDR 303


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 291 PRAYFNQSCGCVPTPV 338
           P  +F Q  GCVP P+
Sbjct: 33  PVIHFLQYPGCVPKPI 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,176
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)