Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P14
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0725 + 35759792-35760358                                         70   2e-12
11_01_0238 - 1835056-1835110,1835671-1835849,1835941-1836246           54   1e-07
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545...    31   1.2  

>03_06_0725 + 35759792-35760358
          Length = 188

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +1

Query: 367 VFVYGTLKRNEPNHGTMTN-PENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYN 543
           VF YGTLKR   NHG + +   +G A+F+    T  + PL+    Y VPFLL+ PG G+ 
Sbjct: 28  VFTYGTLKRGFSNHGLLQDLARDGDASFVGAATTAPRLPLVCGP-YRVPFLLNLPGAGHR 86

Query: 544 VKGEIYEVDDKMLSNLDILE 603
           V GE+Y V  + L  LD LE
Sbjct: 87  VSGELYAVTPRGLDRLDELE 106


>11_01_0238 - 1835056-1835110,1835671-1835849,1835941-1836246
          Length = 179

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
 Frame = +1

Query: 358 AHKVFVYGTLKRNEPNHGTMTNPENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGT- 534
           A  VFVYGTLKR  PNH  +    +G +  +    T     L++   Y+VPFLL  P + 
Sbjct: 22  ATMVFVYGTLKRGFPNHPLLA--ASG-SPLVGAASTATPASLVVG-PYSVPFLLPRPSSS 77

Query: 535 --GYNVKGEIYEVDDKMLSNLDILE-DHPNCYIRDKNDIVLTDSTHRTVMKCWVYF 693
              + V GE+Y V  + L +LD LE  H   Y R K  +V+   +   V++   YF
Sbjct: 78  SGSHLVSGELYAVSPRALVDLDALEGTHLGVYERRKVTVVVEGGSGE-VVEAEAYF 132


>08_01_0627 +
           5451140-5451839,5452635-5452662,5452730-5452786,
           5453205-5453874
          Length = 484

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +3

Query: 315 FNSLIDNTLQQKCNGAQSIRLWYFKKK*TESRHHDEPRERGSDFYS*RND 464
           FN  +D+TLQ KC   +++RL Y      + + H +P   G+DF+S  +D
Sbjct: 386 FNVSMDDTLQAKCARIKTLRLPYDSTDDYDFQVH-KPIWSGADFFSDSDD 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,846,100
Number of Sequences: 37544
Number of extensions: 411591
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)