Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P14
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  

>SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 451 AEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILEDH-PN--CY 621
           A+G+T            N  F LH+   GY +    + +   M + ++I+  H PN  CY
Sbjct: 52  ADGLTWSLALEFAVKTVNKAFFLHNSTLGYKIDNTCFNIPTAMSNAIEIVAKHRPNSVCY 111

Query: 622 IRDK 633
             DK
Sbjct: 112 PHDK 115


>SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +1

Query: 526 PGTGYNVKGEIYEVD---DKMLSNLDILEDHPNCYIRDKNDIVLTDSTHRTVMKCWVYFL 696
           PG GY     I   D   D+  S+L++  D    Y   K    + +  HR V+ CW  F 
Sbjct: 584 PGKGYRNVHVIRGYDTAADEYPSHLNLFSDEVGTYSSGKQVGFIRNDDHRGVLVCW--FA 641

Query: 697 KMFKPEL 717
            +  PE+
Sbjct: 642 GLRPPEV 648


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,196,620
Number of Sequences: 59808
Number of extensions: 534973
Number of successful extensions: 1296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)