Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P13
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 29 0.55
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 28 1.3
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 27 2.2
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 27 3.0
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 6.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.8
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 6.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.8
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 599 VSLFGARVPDHTEALRTTS--INHHSPSATSGS 691
VS + +HT L+ TS ++HHSP ATS S
Sbjct: 530 VSETSINIAEHTPVLKHTSSLLDHHSPLATSSS 562
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +3
Query: 237 TNDLEMATGPKIVHKQFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANL 416
T + A +++ Q N YS + T K +++ NG + I PT KP+ +
Sbjct: 558 TIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMM 617
Query: 417 ANSAVLRMLEEEERNRKGYS 476
A+ A R+L E+ R Y+
Sbjct: 618 AHKA--RILPGEKTIRMHYA 635
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 345 LKNLDNGSVGIDFNNPTTDKPA-NLANSAVLRMLEEEERNR 464
+K L+ ++ DFN+P++D + + A+L+M++ NR
Sbjct: 224 IKKLEQCNIIFDFNDPSSDLASKEIKREALLQMIDYVSENR 264
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 173 HSLQFETGNDADHTNPAAQALNERPRDG 256
H +Q T ++ + NPA N PR+G
Sbjct: 269 HQMQKSTSSNIPYANPAPSGFNGSPRNG 296
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 318 NIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLANSAVLRMLEEEERNRK 467
+I +TL D S ++NNP+T K ++ S ++EE+ +K
Sbjct: 373 SIGDTLQNDFTIYDYDSEDEEYNNPSTQKTEKVSQSKKGAKVKEEKGLKK 422
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 6.8
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +3
Query: 225 HKR*TNDLEMATGPKIVHKQFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDK 404
H + D ++ + PKI H++F +++ +T ++LK L N N+ T+
Sbjct: 60 HSNPSKDNQLISPPKINHREF------LNEEKESDTQTRYLKQLINICNSPSKNHETSLS 113
Query: 405 PANLANSAVLRMLEEEERNRK 467
P+ R L+ E N K
Sbjct: 114 PSKSTIDNNERKLDNEIDNYK 134
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 6.8
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = +2
Query: 254 GHRPEDSTQAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQPDNG*AS*LS*FRRP 433
GHR + L+ V L Y + QT R + +RL +P N S +S P
Sbjct: 472 GHRRSSTADNGTLSSNVPLYPAYNSSPVQT----RTSLFSSRLSKPSNPIVSSVSQANAP 527
Query: 434 KNVRRGRA*PQRIQSEESGVASS 502
KN P + + S ++ +
Sbjct: 528 KNALHSMPSPTSLANLPSNLSDT 550
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/66 (24%), Positives = 24/66 (36%)
Frame = +2
Query: 158 WAGGPHSLQFETGNDADHTNPAAQALNERPRDGHRPEDSTQAVQLAHRVVLATEYQGNAQ 337
WA S+ T + A PA+ A P +P A L+ +Q Q
Sbjct: 409 WAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQ 468
Query: 338 QTPEKP 355
Q+ +P
Sbjct: 469 QSAVQP 474
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 9.0
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +3
Query: 318 NIKETLNKHLKNLDNG-SVGIDFNNPTTDKPANLANSAVLRMLEEEERNRKGYSQKKVVW 494
N TLN + ++ +G S NP+T +P+ NS LR L+ + Y
Sbjct: 355 NSPATLNSYTTSVPSGMSRHPMLMNPSTPEPSLGVNSPSLRPLQSLNNVQNSYRVASTQA 414
Query: 495 PPVPETNGY 521
PP Y
Sbjct: 415 PPPHPLRNY 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,614
Number of Sequences: 5004
Number of extensions: 57309
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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