Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P13
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 33 0.33
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506... 30 2.3
10_06_0120 - 10979458-10979665,10979909-10980585,10981315-109815... 29 3.1
11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549 29 4.1
08_01_0059 - 394001-394708 28 7.1
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 28 9.4
07_01_0614 - 4545306-4545833 28 9.4
05_06_0224 + 26546066-26546830 28 9.4
03_06_0044 + 31255284-31256012 28 9.4
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382... 28 9.4
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 279 KQFNSPIG-LYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLAN 422
+ FN+ G + +QQ T HL+ + G+VG++ NNP P N
Sbjct: 1243 QHFNNSSGPVENQQQCTPTALDHLEEAEQGNVGVNLNNPADGVPDGQLN 1291
>01_01_0663 -
5059881-5060119,5060682-5060898,5061008-5061838,
5063560-5064120
Length = 615
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 254 GHRPEDST----QAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQPD 394
G RP D T +AVQ++ R+ +Y G ++ P+ R+C L+Q +
Sbjct: 356 GARPADVTFDGRKAVQISKRLTKQGDYFGVTEEGKPSPKDRLCIEILEQAE 406
>10_06_0120 -
10979458-10979665,10979909-10980585,10981315-10981538,
10981763-10982136,10982203-10982786
Length = 688
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 191 TGNDADHTNPAAQALNERPRDGHRPEDSTQAVQLAHRV 304
+GND T A + +G+RP+ TQ VQLA V
Sbjct: 294 SGNDCPETREEAMYMGNN-NNGYRPQGETQLVQLASLV 330
>11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549
Length = 792
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 598 SLLIRSPRTRPHRGTSNHLHQPSLSV---RNLRFTXNHPRCSLXNRPLRH 738
S+ + S TR G+ HQPSLSV R+ R + H S+ + P RH
Sbjct: 269 SVPVNSASTRTPTGSRVPHHQPSLSVTGTRSSRRSRGHDERSVHSLPERH 318
>08_01_0059 - 394001-394708
Length = 235
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 630 TQRHFEPPPSTITLRPQPPVHXKPSPV 710
T R + PPP + L P PP P+PV
Sbjct: 39 TPRPYAPPPPSHPLAPPPPHISPPAPV 65
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 372 GIDFNNPTTDKPA--NLANSAVLRMLEEEERNRKGYSQKKVVW 494
GID N +D+P + AN + + L+EEE N + S+ ++ W
Sbjct: 77 GIDKNGDDSDEPCAKDDANQSDMAALKEEEENWELDSEPELTW 119
>07_01_0614 - 4545306-4545833
Length = 175
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 651 PPSTITLRPQP---PVHXKPSPVFAXQPAAASFKGGV 752
PP T+ LRP P + P P A AAAS GG+
Sbjct: 29 PPQTLALRPLPLPRGLRSSPPPPRAAAEAAASAVGGL 65
>05_06_0224 + 26546066-26546830
Length = 254
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 569 DFPSISVLIAVSLFGARVPDHTEAL-RTTSINHHSPSATSGSPXTIPGVRXSTGRCVI 739
D P + +LIAV A + + L R + H P A GSP ++ VR CV+
Sbjct: 70 DMPKLELLIAVHRDIAAAAESLDYLIRAFTTAQHPPPA-PGSPISLESVRLRLTACVL 126
>03_06_0044 + 31255284-31256012
Length = 242
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 206 RRRCLSQTEASAVRPPTFALS 144
RRR +TEA AVRPP A S
Sbjct: 23 RRRSRGRTEAEAVRPPIHAAS 43
>01_01_0521 -
3826257-3826616,3826758-3826918,3826992-3827049,
3827426-3827497,3827582-3827639,3828231-3828347,
3828630-3828782,3829182-3829346,3829814-3830132,
3830276-3830780
Length = 655
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 663 ITLRPQPPVHXKPSPVFAXQPAAASF 740
I L P PP +P PV A +P + F
Sbjct: 22 IVLSPGPPARRRPPPVKAVEPESGGF 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,245,190
Number of Sequences: 37544
Number of extensions: 445814
Number of successful extensions: 1775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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