Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P13
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)                29   4.1  
SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7)                     29   4.1  
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)                 29   5.5  
SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_15619| Best HMM Match : RVT_1 (HMM E-Value=0.025)                   28   7.2  
SB_8630| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      28   7.2  
SB_58171| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_51344| Best HMM Match : K_tetra (HMM E-Value=6e-18)                 28   9.5  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   9.5  

>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 648  PPPSTITLRPQPPVHXKPSPVFAXQP 725
            PPPS     P PP   KPSPV   +P
Sbjct: 944  PPPSPPPKEPTPPPSSKPSPVKEIKP 969


>SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 648 PPPSTITLRPQPPVHXKPSPVFAXQP 725
           P PST T + QP  H +P P+   QP
Sbjct: 50  PQPSTQTSQSQPVAHSQPQPLSQQQP 75


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 282 QFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPAN 413
           Q + PI   +   + + L + L+++   +  +D +NP +D PAN
Sbjct: 23  QNSEPITGNAADRLHDYLEEQLRSISGSTKTLDLSNPNSDHPAN 66


>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
          Length = 839

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = +2

Query: 461 PQRIQSEESGVASSTRNERIS*STTDTRIAAELHAADFPSISVLIAVSLFGARVPDHTEA 640
           P+   + ES VA  T   + +    +T +  E  AA   +++  I  +     VP+ T A
Sbjct: 268 PESTAATESTVAPETTVSQETTVAPETTVPTETTAAPETTVAPEITFAPETTVVPETTPA 327

Query: 641 LRTTSINHHSPSATSGSPXTI 703
           L TTS    +P +T+ +  T+
Sbjct: 328 LETTS----APESTAATESTV 344


>SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7)
          Length = 783

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = -2

Query: 699 VXGEPEVADGE*WLMEVVRSASVWSGTRAPNKETAMSTEIEGKSAACSSAA-IRVSVVDY 523
           +  + EV+  E     V R   V      P  ET   T+++   A CSSA+  R+ +   
Sbjct: 420 IAADDEVSPNEDEECAVCRVCKVAVTDLTPISETDDVTKLQSPYAVCSSASDDRLQLFIS 479

Query: 522 DIRSFRVLEATPL-SSDCILCGYALPLLTFLGRRN*LS*LA 403
           DIR  ++ E + L   +  + G+   + TF GR + L+ LA
Sbjct: 480 DIRLCKIFEISNLHEEESQVSGHVHDVWTF-GRSSVLTSLA 519


>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
          Length = 410

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -2

Query: 645 RSASVWSGTRAPNKETAMSTEIEGKSAACSSAAIRVSVVDYDIRSFRVLEATPLSSDCIL 466
           R+ SV  G  AP   T+    +    A  +S++I VSV        R  E  P+SSD   
Sbjct: 261 RAVSVAGGAGAP-VATSADRSVSPGDAEPASSSISVSVPSAQAEQGRTTEGRPVSSDIAT 319

Query: 465 CGYALP 448
               +P
Sbjct: 320 VAMEVP 325


>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 376 IPTDPLSRFFRCLLSVSLIFCCE 308
           IPTDPLS  +R   + +L FC E
Sbjct: 396 IPTDPLSANYRSAQTSALFFCAE 418


>SB_15619| Best HMM Match : RVT_1 (HMM E-Value=0.025)
          Length = 485

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -1

Query: 280 LCTIFG---PVA-ISRSFV*RLCGGVRVIGVVACLKLK 179
           L TI+G   P A + R ++ R CGG  +IGVV C+ L+
Sbjct: 393 LMTIYGMLHPRANVGRLYLPRQCGGRGLIGVVDCIHLE 430


>SB_8630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -1

Query: 280 LCTIFG---PVA-ISRSFV*RLCGGVRVIGVVACLKLK 179
           L TI+G   P A + R ++ R CGG  +IGVV C+ L+
Sbjct: 35  LMTIYGMLHPRANVGRLYLPRQCGGRGLIGVVDCIHLE 72


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 343 CLLSVSLIFCCEYNPMGELNCLCTIFGPVAISRSFV*RLCGGVRVIGVVACLKL 182
           C L V    CC    MG L C   + G +  +   +  LC  + V+G + C  L
Sbjct: 216 CTLLVMDYLCCTLLVMGYLCCTLLVMGYLCCTLLVMGYLCCTLLVMGYLCCTLL 269


>SB_58171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 200 DADHTNP--AAQALNERPRDGHRPEDSTQA 283
           D D   P   ++ + +RPRD HRPED  +A
Sbjct: 124 DCDSVVPYCRSKCVTKRPRDFHRPEDPEKA 153


>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1520

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +1

Query: 541  PDRSRATRSRFPLNLSTHRSLLIRSPRTRPHRGTSNHLHQPSLSVR 678
            P+    T SR   + S H S   RSPR RP R     LH PS+  R
Sbjct: 1139 PENKGTTPSRG--SPSRHHS---RSPRARPSRKVPLQLHSPSVLAR 1179


>SB_51344| Best HMM Match : K_tetra (HMM E-Value=6e-18)
          Length = 307

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 303 LYSQQNIKETLNKHLKNLDNGSVG 374
           L S ++IKE+LNK +K LD  S+G
Sbjct: 13  LASAEDIKESLNKEVKELDWRSLG 36


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 648 PPPSTITLRPQPPVHXKPSPVFAXQP 725
           PPP  I + P PPV+  P PV+   P
Sbjct: 81  PPPPPIYM-PPPPVYMPPPPVYMPPP 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,663,419
Number of Sequences: 59808
Number of extensions: 489331
Number of successful extensions: 1767
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)