Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P12
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    26   2.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   4.2  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   7.3  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    24   9.6  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    24   9.6  

>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 127 KKAFYRSRWFLASFLYVITEITSFDN 50
           KK FYR  +F    +++IT +  +DN
Sbjct: 295 KKVFYRMGFFYIITIFLITLVVPYDN 320


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 156 IVARETRDDFYKPAKISALTLDIFAFRAHGY*NV 257
           I   E+  D+  P K+S + ++ F FR H   NV
Sbjct: 175 ISPNESAYDYLPPKKVSDILIEQFFFRCHMLINV 208


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +1

Query: 52  YQSLLSRLLHKEMKPETNDS 111
           ++++LSRL +KE+ P T+++
Sbjct: 346 WETMLSRLYNKELTPSTDEN 365


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 165 RETRDDFYKPAKISALTLD 221
           R  +D  Y+P +I A+T+D
Sbjct: 162 RSAKDGIYRPPRIRAVTMD 180


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 164 GDNRDPFCTRDC*ESFLSESLVSGFISLCNNRDNK 60
           G +R P+       SF+SES V   I L NNR+ K
Sbjct: 140 GTSRTPYLHAQYANSFMSESAVPISIEL-NNREAK 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,087
Number of Sequences: 5004
Number of extensions: 23286
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)