Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P12
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_6816| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_57665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 212  QSGDLSWLIKVISCFSGDNRDPFCTRDC*ESFLS 111
            QS    + ++ ++  +GD+RD FC+  C + + S
Sbjct: 4094 QSAQKDFRVQSVNVEAGDSRDAFCSEACLKQYYS 4127


>SB_6816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 139 HVIAKKAFYRSRWFLASFL 83
           HVI K+ F+++RW L+  L
Sbjct: 40  HVIGKRQFFKNRWLLSYML 58


>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 166  LATIEIHSAHVIAKKAFYRSRWFLASFLYVITEITSF 56
            L  +  H+ HV+ ++   RSR   A+ L V+  ++SF
Sbjct: 2118 LFRVSNHAEHVVYRQNVVRSRVLCATLLPVVYSVSSF 2154


>SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 243 REHGRQRYPVSKRRS*LAY-KSHLLFLWRQSRSILHT 136
           +E G+ +  +S R+S LA    H LF+WR+    L T
Sbjct: 390 KEIGKVKQAISYRKSQLAIIVRHYLFMWRKDNPNLRT 426


>SB_57665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 166 LATIEIHSAHVIAKKAFYRSRWFLASFLYVITEITSF 56
           L  +  H+ HV+ ++   RSR   A+ L V+  ++SF
Sbjct: 198 LFRVSNHAEHVVYRQNVVRSRVLCATLLPVVYSVSSF 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,302,830
Number of Sequences: 59808
Number of extensions: 170322
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)