Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P11
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...   175   5e-45
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   4.4  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   5.8  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   5.8  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   7.6  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score =  175 bits (427), Expect = 5e-45
 Identities = 92/226 (40%), Positives = 127/226 (56%), Gaps = 2/226 (0%)
 Frame = +2

Query: 161 TMVKILFLHPDLGIGGAERLVVDAALAFQKKGHEVAFYTNHHDPTHCFTETRDGTFRVTV 340
           T +KI F+HPDLGIGGAERLVVDAA+  Q  G EV  +T+H D  HCF E RDGT +V V
Sbjct: 15  TPIKIAFIHPDLGIGGAERLVVDAAVGLQSLGKEVVVFTSHCDKKHCFEEIRDGTIKVKV 74

Query: 341 VGDWIPRSILGRFKXXXXXXXXXXXXXXXXXXXXPNEEPLLIFCDSISLCIPFLKMARGP 520
            GDW+P SI GR                        +    I  D +S C+PFL +A   
Sbjct: 75  YGDWLPSSIFGRLSIFCSSLRQVYLTMILLTNYMHFD---AIIVDQLSTCVPFLLLASQ- 130

Query: 521 FRVIFYCHHPDKLLTSEGGILKKLYRAPLNWLEELTTAKADKVLVNSKYTARVYQDAFQS 700
             ++FYCH PDK L   GGILKKLYR P + +E  +   AD+++VNSK+TA V++ AF  
Sbjct: 131 -MILFYCHFPDKYLAKRGGILKKLYRIPFDTVEAESVRLADRIVVNSKFTASVFKKAFPK 189

Query: 701 IKDIPDICYPSINTQYFKSTMPKPLKEIVPV--GTDKFIFLSINRY 832
           I+    I +P ++ +     +   L E +     + + + +S+NR+
Sbjct: 190 IRKPLRIVHPCVDIEAASKPLEFQLPEKILYLRYSQRKLLISVNRF 235


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 738  TLNILSLQCQNHSKKLFQW 794
            TL I+SL C  H++ LF W
Sbjct: 1386 TLGIVSLNCGFHARALFYW 1404


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 675 LAVYLLLTKTLSALAVVNSSSQLSGA 598
           L V LL  +TL    V+NSSS LSG+
Sbjct: 408 LNVSLLRDETLFTAPVINSSSSLSGS 433


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 105 WMFLF-VQMCN*IELVYPLEQW*KYFFFIQ 191
           W FL   ++ +  E+V P ++W +++FF+Q
Sbjct: 282 WNFLMDSKLKHLCEMVEPFDEWEEFYFFLQ 311


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 115 YLYKCVIK*NWCTLLNNGENTFSSSRLGYRRC 210
           Y Y+CVIK ++C L  +    + + +L  + C
Sbjct: 464 YAYECVIKPSYCKLRESLTELYRTQKLRMQDC 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,647,918
Number of Sequences: 5004
Number of extensions: 79470
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)