Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P11
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53822| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_34821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_37901| Best HMM Match : rve (HMM E-Value=1.5e-07)                   29   6.2  
SB_55630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_53822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
 Frame = +2

Query: 638 ADKVLVNSKYTARVYQDAFQSIKDI-PDICYPSINTQYFKSTMP-KPLKEIVPVGTDKFI 811
           AD VLVNS +TA  +   F++++   P + YPSIN + F      + +K+++P  T K +
Sbjct: 2   ADLVLVNSNFTADTFLKTFKTLRSSRPSVLYPSINFESFHIPFDHEEVKDLIP-PTAKHV 60

Query: 812 FLSINRY 832
           FLSINRY
Sbjct: 61  FLSINRY 67


>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 612 GLRN*QQLKQIKS*STVNTQLGYTKMLSKASKTFLTFAIHLLTLNILS 755
           G+RN Q+L  +K+   +N   G+T   +    +  TFAI++LT NIL+
Sbjct: 436 GIRN-QELHHLKNAMYLNAFFGFTFTCAPFLVSLATFAIYVLTGNILT 482


>SB_34821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 512 RGPFRVIFYCHHPDKLLTSEGGILKKLYRAPLN 610
           +GPFR+ F    PD  ++SEG    KL ++P N
Sbjct: 177 KGPFRLCFVSKSPDVRISSEGLESMKLLQSPGN 209


>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 107 PVLQYNVNKGGGRRLLISLESPDSTSKSHSMKIEN 3
           P +Q+ + K GG  L+   E  D   KS +MK+EN
Sbjct: 29  PSVQFEIQKHGGNLLISFWEVRDFWEKSLAMKLEN 63


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 605 LNWLEELTTAKADKVLVNSKYT--ARVYQDAFQ-SIKDIPDICYPSINTQYF 751
           L+W  +  T ++ +VLV+  ++  +RV+    Q  + D+PD+  P  +   F
Sbjct: 92  LHWFSDYLTTRSQRVLVDGAFSNLSRVHSGVPQLYVNDLPDVVSPGSSIALF 143


>SB_37901| Best HMM Match : rve (HMM E-Value=1.5e-07)
          Length = 246

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 195 WVSAVLSDL*SMPHWRFRRKVTKLLSTQTITIQRIALPKHVMVHFVLR 338
           W   V++D    P   FR +VTK++  + +TIQR     H    FV R
Sbjct: 46  WPHTVIAD----PGTEFRGEVTKIMKKKGVTIQRSEAGNHRAQAFVER 89


>SB_55630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 802 VSTHWNNFFEWFWHCRLKILSVNRWIANVRNVFDALESILVYPSCVF 662
           VST    + +W  H    I + N  I N + +++ +++    P+C F
Sbjct: 32  VSTRIKRYHQWQHHLDEYIAAFNGNIPNSKEMYECVDATTASPACFF 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,952,900
Number of Sequences: 59808
Number of extensions: 602428
Number of successful extensions: 1394
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)