Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P11
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 269 KQLRDLSSETPMRHRLQVAQHRRYPSLDEEKVF 171
           K+L DL   TP+ + L+  Q     + ++ K+F
Sbjct: 507 KKLEDLEMGTPLENILESCQQDETHAPEKTKIF 539


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 687 SWYTLAVYLLLTKTLSALAVVNSSSQLSGALYNFLRIP 574
           SW  +  Y L ++  + L+ V +    SG L N  R P
Sbjct: 181 SWDEVMPYYLKSENNTELSRVGTKYHRSGGLMNVERFP 218


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 663 LLLTKTLSALAVVNSSSQLSGALYNFLRIPPSEVSNLSGW 544
           LL    +  ++  +++S LSG   + + + P + S  SGW
Sbjct: 414 LLEIPPIRKISDCSTTSSLSGDESDVVELQPVKSSKSSGW 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,935
Number of Sequences: 438
Number of extensions: 5854
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)