Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P09
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0826 - 28453018-28453284,28453286-28453594 36 0.025
03_01_0102 - 826827-827411 33 0.31
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080... 31 0.72
07_01_0469 - 3552409-3553368 31 1.3
06_03_0905 + 25843547-25844314 31 1.3
02_05_0275 - 27377480-27378079 30 1.7
03_05_0670 - 26594292-26594785,26595222-26595531 29 3.9
12_02_0297 + 17029850-17030047,17030814-17030973,17031666-170317... 28 6.7
12_02_1175 + 26702744-26704507 28 8.9
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803... 28 8.9
01_01_1175 + 9369762-9369857,9369932-9370069,9370496-9370751,937... 28 8.9
>04_04_0826 - 28453018-28453284,28453286-28453594
Length = 191
Score = 36.3 bits (80), Expect = 0.025
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 439 WGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGALTGALYKANLGLTAMIVGGSLGAV 618
+G +L + +F I +T+ R AG TGALY+A G A IVG S+G +
Sbjct: 111 YGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGIGTGALYRAAAGPRAAIVGSSVGGL 170
>03_01_0102 - 826827-827411
Length = 194
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +1
Query: 376 GDAKKKLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGALTG 555
GD K + V + G L + +++ I + + A R I TAG TG
Sbjct: 95 GDTAKIRANRVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTG 154
Query: 556 ALYKANLGLTAMIVGGSLGAV 618
AL++A G + V G++G V
Sbjct: 155 ALFRAANGPRSAAVAGAIGGV 175
>02_02_0492 -
10907529-10907629,10907714-10907953,10908035-10908098,
10908416-10908721,10909347-10909561,10909656-10909950,
10910493-10910597,10911112-10911180,10911433-10911519,
10911953-10913704,10914964-10915054,10915217-10915488
Length = 1198
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 391 KLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEY 531
K D TI K WKL +FT + +L+ T+S+Y G LIEY
Sbjct: 205 KYTDVTTINLVKALVLTTWKLILFTAVCALL-RTVSSYVG-PYLIEY 249
>07_01_0469 - 3552409-3553368
Length = 319
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = -2
Query: 668 PVIFNIPIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVVYSMSVVS 510
PV + PP AP PP AV AL PVSAPA S + S
Sbjct: 198 PVRIQLAPRNPPPSAAPAAPPVPPAAPAVPAAPALAPVPVSAPASALSFAPAS 250
>06_03_0905 + 25843547-25844314
Length = 255
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 650 PIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVVYSMSVVSP 507
P+ + PP+ T P P ++ V P PV+ P VV V P
Sbjct: 94 PVTRPPPVTYPTPPVTTPPVV-VGPPVTYPTPPVTTPPVVVGPPVTYP 140
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 671 TPVIFNIPIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAP 540
TP + P++ PP+ T P P ++ V P PV+ P
Sbjct: 105 TPPVTTPPVVVGPPVTYPTPPVTTPPVV-VGPPVTYPTPPVTYP 147
>02_05_0275 - 27377480-27378079
Length = 199
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 523 IEYTTAGALTGALYKANLGLTAMIVGGSLGAV 618
+ AGA GALY+ G +MIV G LG V
Sbjct: 141 VNTVAAGASAGALYRIASGPRSMIVAGILGGV 172
>03_05_0670 - 26594292-26594785,26595222-26595531
Length = 267
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 671 TPVIFNIPIIKSPPIVL-NTAPREPPTIIAVNPKFALYNAPVSAPA 537
+P + P I+ PP L APR+ P++ + + +L+ + +APA
Sbjct: 107 SPSLARSPAIREPPPTLATAAPRQFPSLKTLAHRTSLFTSSANAPA 152
>12_02_0297 +
17029850-17030047,17030814-17030973,17031666-17031782,
17032145-17032575
Length = 301
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 614 APREPPTIIAVNPKFALYNAPVSAPAVVYSMSVVSPRYADIV 489
+P PP +A A+ AP + PAV+ ++ P+ AD+V
Sbjct: 122 SPLMPPPPLAAPVPAAVSPAPATPPAVLSPRKLLRPQGADVV 163
>12_02_1175 + 26702744-26704507
Length = 587
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 430 AYKWGWKLSIFTGMFS--LIATTISAYRGDTTLIEYTTAGALTGA 558
A++W ++ T + S L+A T + TTL+ T AGAL A
Sbjct: 356 AHRWSKPTAVATALLSPLLLAATTAPTTTATTLLAATLAGALLAA 400
>02_02_0490 -
10879761-10879861,10879946-10880185,10880274-10880337,
10880426-10880731,10881098-10881312,10881417-10881711,
10882193-10882357,10882477-10882527,10882657-10883109,
10883195-10883281,10883736-10884800,10884858-10885376
Length = 1186
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 391 KLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEY 531
K TI K WKL +FT + +L+ T+S+Y G LIEY
Sbjct: 46 KYTGVTTIKLVKALVLTTWKLILFTAVCALL-RTVSSYVG-PYLIEY 90
>01_01_1175 +
9369762-9369857,9369932-9370069,9370496-9370751,
9371553-9371630,9372205-9372344
Length = 235
Score = 27.9 bits (59), Expect = 8.9
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Frame = +1
Query: 364 YKTVGDAKKKLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAG 543
Y+ + DA +K I AKG+ G +L +FT F I + RG + AG
Sbjct: 98 YRLMRDAMEKR----FIRVAKGSLVGGVRLGMFTATFFGIQNLLIEKRGVHDVFNIAGAG 153
Query: 544 ALTGALYKANLGLTAM------IVGGSLGA 615
+ T A + L + M +VG +LGA
Sbjct: 154 SATAAAFGLILPGSPMWRARNVLVGSALGA 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,647
Number of Sequences: 37544
Number of extensions: 377928
Number of successful extensions: 999
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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