Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P09
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025715-5|AAP13755.1| 281|Caenorhabditis elegans Hypothetical ... 59 3e-09
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 31 0.64
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 31 0.64
U40415-10|AAK39254.1| 215|Caenorhabditis elegans Dnaj domain (p... 31 0.64
Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical pr... 31 0.85
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 31 0.85
AF038611-6|AAB92039.1| 181|Caenorhabditis elegans Hypothetical ... 30 1.5
Z75549-3|CAA99915.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.0
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 29 3.4
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 29 3.4
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 29 3.4
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 29 3.4
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 29 4.5
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 29 4.5
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 7.9
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 7.9
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AC025715-5|AAP13755.1| 281|Caenorhabditis elegans Hypothetical
protein Y38F2AR.3 protein.
Length = 281
Score = 59.3 bits (137), Expect = 3e-09
Identities = 38/141 (26%), Positives = 62/141 (43%)
Frame = +1
Query: 190 WDRVKAMYKKNEFDEVSPELHTVVQSTLCGAXXXXXXXXXXSSREAYLYFIENNQATAYK 369
W+R+K++Y++ E VV+ + G +R AY NN Y
Sbjct: 66 WERLKSIYERENSMEKDVTFR-VVRMSFLGGFLVGGATGYAQARHAYE---TNNVGRKYL 121
Query: 370 TVGDAKKKLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGAL 549
+ DA K+ DY + FAKG + G+K ++ +G +AT I+AYR + A
Sbjct: 122 SPSDAVKRKIDYAIVRFAKGGFGVGFKCALISGSIVFLATHITAYRDKFASWYFPAISAS 181
Query: 550 TGALYKANLGLTAMIVGGSLG 612
G ++ +GL + LG
Sbjct: 182 VGGVFTFPIGLLGSMKAVGLG 202
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 31.5 bits (68), Expect = 0.64
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = -2
Query: 689 RISLIRTPVIFNIPI--IKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVVYSM-S 519
R++L+ TP + +PI +K+ P N PR PP I +P AL+N P S+ +
Sbjct: 526 RVTLLPTPTLVFVPISPVKNLPSDFN--PRIPPPQIYSSPGQALFNPTNLYPTPPSSLPN 583
Query: 518 VVSPRYADIVVAIKLNIPVKILNFHPHL*APLANPIVT 405
P ++ N K F+ H A +NP +T
Sbjct: 584 TYVPNQESFDESV--NRDKKSFIFNNHSKANFSNPTLT 619
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 31.5 bits (68), Expect = 0.64
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = -2
Query: 689 RISLIRTPVIFNIPI--IKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVVYSM-S 519
R++L+ TP + +PI +K+ P N PR PP I +P AL+N P S+ +
Sbjct: 526 RVTLLPTPTLVFVPISPVKNLPSDFN--PRIPPPQIYSSPGQALFNPTNLYPTPPSSLPN 583
Query: 518 VVSPRYADIVVAIKLNIPVKILNFHPHL*APLANPIVT 405
P ++ N K F+ H A +NP +T
Sbjct: 584 TYVPNQESFDESV--NRDKKSFIFNNHSKANFSNPTLT 619
>U40415-10|AAK39254.1| 215|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 14 protein.
Length = 215
Score = 31.5 bits (68), Expect = 0.64
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 546 CTCSCVLDECCISTICRYCCG-YQTEH 469
C C C+ CC C +CCG Y+ +H
Sbjct: 146 CCCGCM---CCCQCCCNFCCGKYKPKH 169
>Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical
protein F15D3.7 protein.
Length = 242
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 469 MFSLIATTISAYRGDTTLIEYTTAGALTGALYKANLGLTAMIVGGSLG 612
M+S + + + R + L + AGALTGA+Y++ GL A VG +G
Sbjct: 171 MYSALEIGLRSVRAEDELNGFG-AGALTGAIYRSPHGLKASGVGALVG 217
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 668 PVIFNIPIIKSPPIVLNTAPREPPTIIAVNPKFALYNA-PVSAPAVVYSMSVVSPRYA 498
PV P++ PPIV+ P P +N NA PV P + SV++P YA
Sbjct: 254 PVTIPPPVVMPPPIVIPGMPNAPAVTEVLNLVSLPLNAKPVPIP---IASSVIAPNYA 308
>AF038611-6|AAB92039.1| 181|Caenorhabditis elegans Hypothetical
protein E04A4.5 protein.
Length = 181
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 442 GWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGALTGALYKANLGLTAMIVGGSLGAV 618
G + + + GMFS I + A R I +G LTGAL G M LG+V
Sbjct: 61 GVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSV 119
>Z75549-3|CAA99915.1| 301|Caenorhabditis elegans Hypothetical
protein T19C4.3 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 579 IDCYDCWWFPRSCIKYNRWTFNYWNIKNYWCSYERY-TTSIIQNQRI 716
I C+DC P N + N++ +Y +Y +Y TT++I R+
Sbjct: 67 ITCFDCLMVPVYMFFDNNFPMNFFTAMSYHMAYVQYSTTALISVNRL 113
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 600 WFPRSCIKYNRWTFNYWNIKNYWC 671
W + I+Y + F YW+I WC
Sbjct: 566 WLDWNSIQYESYQFPYWSILTAWC 589
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 390 KTARLCNNWICQRCLQVGMEIKYFYRN 470
+ AR C +RC + GM+I+YF N
Sbjct: 69 EAARFCKPCRLKRCYEAGMKIEYFQHN 95
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 600 WFPRSCIKYNRWTFNYWNIKNYWC 671
W + I+Y + F YW+I WC
Sbjct: 566 WLDWNSIQYESYQFPYWSILTAWC 589
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 390 KTARLCNNWICQRCLQVGMEIKYFYRN 470
+ AR C +RC + GM+I+YF N
Sbjct: 54 EAARFCKPCRLKRCYEAGMKIEYFQHN 80
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 285 CWCLFRRICLISRSLPVFY*KXXXXXXXXXXXCKEKTARLCNNWICQRCLQVGME 449
C FRR+CL RS K KT C QRCL VGM+
Sbjct: 70 CKTFFRRMCLSGRSFSC------KLDRDCFDLTKRKTPAKCRACRLQRCLSVGMD 118
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 285 CWCLFRRICLISRSLPVFY*KXXXXXXXXXXXCKEKTARLCNNWICQRCLQVGME 449
C FRR+CL RS K KT C QRCL VGM+
Sbjct: 70 CKTFFRRMCLSGRSFSC------KLDRDCFDLTKRKTPAKCRACRLQRCLSVGMD 118
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 668 PVIFNIPIIKSPPIVLNTAPREPP 597
PV+ + P+ + PIV+ P+EPP
Sbjct: 1651 PVVISEPVPEPVPIVVEEPPKEPP 1674
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 668 PVIFNIPIIKSPPIVLNTAPREPP 597
PV+ + P+ + PIV+ P+EPP
Sbjct: 1651 PVVISEPVPEPVPIVVEEPPKEPP 1674
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 668 PVIFNIPIIKSPPIVLNTAPREPP 597
PV+ + P+ + PIV+ P+EPP
Sbjct: 472 PVVISEPVPEPVPIVVEEPPKEPP 495
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 668 PVIFNIPIIKSPPIVLNTAPREPP 597
PV+ + P+ + PIV+ P+EPP
Sbjct: 472 PVVISEPVPEPVPIVVEEPPKEPP 495
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 668 PVIFNIPIIKSPPIVLNTAPREPP 597
PV+ + P+ + PIV+ P+EPP
Sbjct: 1651 PVVISEPVPEPVPIVVEEPPKEPP 1674
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 668 PVIFNIPIIKSPPIVLNTAPREPP 597
PV+ + P+ + PIV+ P+EPP
Sbjct: 1651 PVVISEPVPEPVPIVVEEPPKEPP 1674
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,194
Number of Sequences: 27780
Number of extensions: 359566
Number of successful extensions: 1232
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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