Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P06
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             158   3e-39
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.9  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   2.6  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           29   3.4  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  158 bits (383), Expect = 3e-39
 Identities = 73/100 (73%), Positives = 88/100 (88%)
 Frame = +1

Query: 148 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 327
           P SKELRQK+NV+S+P+RKDDEVQV RGH+K QQVGKV+QVYRKK+V++I+RIQREKANG
Sbjct: 33  PLSKELRQKYNVRSIPVRKDDEVQVTRGHFKSQQVGKVIQVYRKKWVIHIDRIQREKANG 92

Query: 328 ATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 447
           AT  VGIHPSK  IVKLK++KDRK ILDR+ + +LA  GK
Sbjct: 93  ATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 152
           MK N +V+SSRRK+RK HFSAPS +RR LMS+PL
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPL 34


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23   PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-XLRN*DKNSM*NPCLF 199
            PCRFGE   N++     F +    + A  CSF       + SP        N + +PC F
Sbjct: 1239 PCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCSF 1298

Query: 200  AK 205
             +
Sbjct: 1299 GE 1300



 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23   PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-XLRN*DKNSM*NPCLF 199
            PCRFGE   N++     F +    + A  C F       + SP        N + +PC F
Sbjct: 1281 PCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1340

Query: 200  AK 205
             +
Sbjct: 1341 GE 1342



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23   PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-XLRN*DKNSM*NPCLF 199
            PCRFGE   N++     F +    + A  C F       + SP        N + +PC F
Sbjct: 1225 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRF 1284

Query: 200  AK 205
             +
Sbjct: 1285 GE 1286



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23   PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-XLRN*DKNSM*NPCLF 199
            PCRFGE   N++     F +    + A  C F       + SP        N + +PC F
Sbjct: 1309 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1368

Query: 200  AK 205
             +
Sbjct: 1369 GE 1370



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23   PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-XLRN*DKNSM*NPCLF 199
            PCRFGE   N++     F +    + A  C F       + SP        N + +PC F
Sbjct: 1337 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1396

Query: 200  AK 205
             +
Sbjct: 1397 GE 1398



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23   PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-XLRN*DKNSM*NPCLF 199
            PC FGE   N++     F +    + A  CSF       + SP        N + +PC F
Sbjct: 1267 PCSFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCRF 1326

Query: 200  AK 205
             +
Sbjct: 1327 GE 1328



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 23   PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-XLRN*DKNSM*NPCLF 199
            PCRFGE   N++     F +    + A  C F       + SP        N + +PC F
Sbjct: 1365 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCCFGEAPDNKIASPCRF 1424

Query: 200  A 202
            +
Sbjct: 1425 S 1425


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 324 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 488
           W N IC     ++C C+V DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 498 LRGLHGCGSFLGVFTLVFAKCSQS 427
           L GLH CG  +     VFAKC Q+
Sbjct: 72  LVGLHPCGDLVPTMLKVFAKCDQA 95


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 415 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFYD 272
           C  G +  +   ST  +  L+G+ CR M+L HWP  F  +  + + +T  D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 26   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTY 124
            C F EER    QQ G   K E+ ++AF  +  Y
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAFGFNTIY 2615


>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 318 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 196
           L +++  ++YN+L  +H+ H  N L  V  T+  N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 456 TLVFAKCSQSALCSAIEDCFAVFI 385
           T+  + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,992,451
Number of Sequences: 59808
Number of extensions: 343540
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)