Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_P05
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)                29   5.5  
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                     28   9.6  

>SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)
          Length = 175

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +1

Query: 22  KLIQKNVTSKSRIVILCATKLDQ*YERNLSKSWTVIMIEVYIGEEQ 159
           K +Q+N   K+  + +    L++ Y  +L +SW+++  + Y+G+ Q
Sbjct: 15  KKVQENTFFKNFFLTVVFQGLEEKYGLDLDRSWSILKNKKYMGKPQ 60


>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +1

Query: 22  KLIQKNVTSKSRIVILCATKLDQ*YERNLSKSWTVIMIEVYIGEEQ 159
           K +Q+N   K+  + +    L++ Y  +L +SW+++  + Y+G+ Q
Sbjct: 124 KKVQENTFFKNFFLTVVFQGLEEKYGLDLDRSWSILKNKKYMGKPQ 169


>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 464 PHLRHLFIKKIAVVTAFYSLRLSGSSYFRLTP 369
           P  +HL +K++ VV  F  ++++ +SY ++ P
Sbjct: 212 PSEKHLLLKQLPVVPLFGDMQIALASYLKMCP 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,990,126
Number of Sequences: 59808
Number of extensions: 427669
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)