Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_P02
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 355 2e-98
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.035
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.3
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.3
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4) 29 5.3
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 5.3
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 28 7.0
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4) 28 7.0
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 7.0
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 28 9.2
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044) 28 9.2
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 28 9.2
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017) 28 9.2
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 355 bits (873), Expect = 2e-98
Identities = 161/217 (74%), Positives = 188/217 (86%)
Frame = +1
Query: 61 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 240
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 241 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 420
AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61 AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 421 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 600
LLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180
Query: 601 EVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQA 711
EVLR+RG + R W+++ DL+FYRDPEE+EK+EQ A
Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQAA 217
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 37.1 bits (82), Expect = 0.015
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Frame = +3
Query: 234 CSGCSCCRSHREPR*CVRHLITALRSACCTEVC--RAHRCYA---YCGTFHTRCFY*PDP 398
CS C R CV I L + C C + H A C H+ C
Sbjct: 822 CSTCEGGNGLRNCSACVAPFI--LLDSYCVRECPQKGHFLNAKLRQCKKCHSSC-----S 874
Query: 399 SCIP*TSSLDCIGSCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCHP 545
SCI S+ DCI +C+ PS F C+ +C T++C +CHP
Sbjct: 875 SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 35.9 bits (79), Expect = 0.035
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -2
Query: 662 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGMAMST-NLSGE---SVLHKA 495
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 494 ITGMLTY 474
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 433 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 528
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -2
Query: 674 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGMAMSTNLSGESVL 504
R N+ T ++ STP + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 503 HKAITG 486
+TG
Sbjct: 63 EFTLTG 68
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 565 HSIGLMWWLLAREVLRLRGVLP 630
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
Length = 158
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 260 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNL 418
PSRTPL ++ +G +S+ Y VLR+ R H ++ ++R L ++N+
Sbjct: 49 PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 623 TPRSLNTSRANNHHIKPIEWEDLVLHGMAMSTNLSGESVLH 501
T +SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 675 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRMGR-LGVAWDGNVHK 526
+V Q+ + P +T HT+ T P HQ + MGR G D NV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 409 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 558
RE R +++ +D A H P + +Y NI +I L NT S + +D I N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306
>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
Length = 296
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = -2
Query: 674 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLV---LHGMAMSTNLSGESVL 504
R + +T R+ STP + ++ +I+P +W D+ + ++ L+ E +
Sbjct: 164 RGSKRRSTVKYRFGDASTPLYQDLKDKSSRNIRPWQWHDMTSRYQYAQSLINQLADERLY 223
Query: 503 HKAITG----MLTYEASVMG*WSCAGSNTIKR 420
+TG ++ ++ASV+ W N +R
Sbjct: 224 EFTLTGQFEDVVGHDASVL--WKTVSLNGKRR 253
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -2
Query: 641 RWSRGSTPRSLNTSRA---NNHHIKPIEWE-DLVLHGMAMSTNLSGESVLH 501
RWS +TPR TS N H+ P+ + D+ H A + +L S ++
Sbjct: 62 RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112
>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +3
Query: 228 KTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCG 362
+TC C+ C C +L+ C + AHRC CG
Sbjct: 594 RTCGRCNVCYDAENDSVC-----DSLKHTCSDDEATAHRCSLTCG 633
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 667 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*NGKTWCC 548
R QP H ++ + A HH A LH P +TS W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
Length = 899
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 291 DDEHISGVLDGYDSTSSQNK 232
++EHI+ VLDGYD S +K
Sbjct: 60 NEEHIAFVLDGYDELPSSSK 79
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 511 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 642
+SPL + I +PCNT +S+ W+LLA + ++ VL D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533
>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
Length = 1243
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 291 DDEHISGVLDGYDSTSSQNK 232
++EHI+ VLDGYD S +K
Sbjct: 346 NEEHIAFVLDGYDELPSSSK 365
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,756,044
Number of Sequences: 59808
Number of extensions: 650609
Number of successful extensions: 1696
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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