Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_O24
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.06c |atg12|apg12|autophagy associated protein Atg12|Sch...    80   3e-16
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.98 
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   1.3  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    28   1.3  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.9  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   9.1  

>SPAC1783.06c |atg12|apg12|autophagy associated protein
           Atg12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 42/124 (33%), Positives = 74/124 (59%)
 Frame = +1

Query: 79  DEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKATGNAPIMKKKKWAVD 258
           +++L  E  SQ+   +E     ++   N+   K ++ +V++  KA G  P+++K  ++++
Sbjct: 11  EKRLATEEDSQN-EDIENQLPSIETIINTYREKENR-RVNLRFKAIGRTPLLRKTVFSIN 68

Query: 259 AEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLYECFGTDGKLVLHYCKS 438
           A +    +  F+KK L L  +  L LYVN +FAPSPD+IV NLY+ F  D  L+++YC +
Sbjct: 69  ASQRFEKVTRFLKKELGLPMNSSLVLYVNSSFAPSPDEIVGNLYDNFAIDSHLLINYCIN 128

Query: 439 QAWG 450
            A+G
Sbjct: 129 VAFG 132


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 64  KSKMSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKATGNAPIMKKK 243
           KSK    K   E  S +  G E  ++  D+ E  + +  +    D    AT +AP  KKK
Sbjct: 560 KSKKKTSKAQQEANSTTAEGKE--KLSGDSTETGNSTNKEASTEDTKANATASAPNKKKK 617


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 280 IMEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLYEC 396
           +M F+K Y   E  EK     N TF PS   +V     C
Sbjct: 415 LMNFMKTYFPREIKEKFEENENDTFTPSSISVVSGQNNC 453


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +1

Query: 67  SKMSDEKLIDETQSQS--VAGMEALRIEVDNKENSDPSKSDKLKVDIL-LKATGNAPIMK 237
           SK +++K ++ET+S+   V   E   IEVD+KE    SK    KV+    K T   P   
Sbjct: 477 SKETEDK-VEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKD 535

Query: 238 KKKWAVD-AEK 267
             K A + AEK
Sbjct: 536 DNKEANEKAEK 546


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 73  MSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVD 198
           MSDEKL  E  S S  G +  R    +     P    +LK++
Sbjct: 54  MSDEKLSSEASSHSTLGQQQARDGRQSPSKEAPFGEGELKLE 95


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 238 KKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVN 345
           KK W  +A +    I+EF+++ +   AD  L LY N
Sbjct: 504 KKFWESNAAEYCLAILEFIERCIYYSADRSLELYDN 539


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 254 TAHFFFFIIGAFPVAFSRMSTF 189
           T   F F IGAF +AF+   TF
Sbjct: 634 TLDIFMFTIGAFAMAFTTYMTF 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,122
Number of Sequences: 5004
Number of extensions: 66417
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)