Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_O24
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-7|AAK18856.1|  118|Caenorhabditis elegans Lc3, gabarap an...    65   5e-11
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    34   0.098
U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...    30   1.6  
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...    30   1.6  
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   8.5  
AF125459-11|AAD12842.2|  315|Caenorhabditis elegans Serpentine r...    28   8.5  

>U32305-7|AAK18856.1|  118|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 3 protein.
          Length = 118

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +1

Query: 160 NSDPSKSDKLKVDILLKATGNAPIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLY 339
           +++P KSDK  V + L+   +AP++K KK  V+    +   +  ++K L ++A+  LFLY
Sbjct: 20  SAEPPKSDK--VTVRLRNIADAPVLKNKKMVVNPTDTVASFILKLRKLLNIQANNSLFLY 77

Query: 340 VNQTFAPSPDQIVRNLYECFG---TDGKLV-LHYCKSQAWG 450
           ++ TFAPSPD     L  C+    TD +++ L Y  + A+G
Sbjct: 78  IDNTFAPSPDTTFETLSRCYSVKITDKEILELQYSITPAYG 118


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 226 PIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLY-ECFG 402
           P+M + K+ V     +  +M  V++ L+L   +  FL VN+    S    + NLY +   
Sbjct: 55  PLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERD 114

Query: 403 TDGKLVLHYCKSQAWG 450
            DG + + Y    A+G
Sbjct: 115 PDGFVYMVYTSQPAFG 130


>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 232 MKKKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLYE 393
           + KKK+ V ++  +G     ++K ++L  ++ LF +VN    P     +  LY+
Sbjct: 44  LDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVI-PQTMTTMGQLYQ 96


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 232 MKKKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLYE 393
           + KKK+ V ++  +G     ++K ++L  ++ LF +VN    P     +  LY+
Sbjct: 44  LDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVI-PQTMTTMGQLYQ 96


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 238 KKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFAP 360
           KKK  V+   P+ WIM +V +YL+L     LF+     +AP
Sbjct: 330 KKKMIVN---PVTWIMFYVHRYLRLTPPIMLFIGFFTVYAP 367


>Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical
           protein ZK809.5b protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 67  SKMSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKA 213
           +K + EK  DE Q +    ME LR+E +  E +    +DK + D+ ++A
Sbjct: 189 NKENFEKCRDEWQRKMELEMEELRLERERIEVASLKSTDKRRSDMAIEA 237


>Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical
           protein ZK809.5a protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 67  SKMSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKA 213
           +K + EK  DE Q +    ME LR+E +  E +    +DK + D+ ++A
Sbjct: 187 NKENFEKCRDEWQRKMELEMEELRLERERIEVASLKSTDKRRSDMAIEA 235


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 482  KYIEETLYI*FCQSVCFYSLFSII*FGTYYQKNNHATYIQI 604
            K  +E L+I     +CF++   I+   TYY K+ H  + Q+
Sbjct: 2560 KMRDEQLFITIRDMLCFFASLYIMVMLTYYCKDRHGYWYQL 2600


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 482  KYIEETLYI*FCQSVCFYSLFSII*FGTYYQKNNHATYIQI 604
            K  +E L+I     +CF++   I+   TYY K+ H  + Q+
Sbjct: 2560 KMRDEQLFITIRDMLCFFASLYIMVMLTYYCKDRHGYWYQL 2600


>AF125459-11|AAD12842.2|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 24 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 302 YFFTNSIIHPIGFSASTAHFFFFIIGAFPVAFSRMS 195
           YFFT SII    ++ ST +  F  I    ++F+RM+
Sbjct: 105 YFFTPSIITKTYYTMSTYNAAFKTISQIVISFNRMT 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,153,176
Number of Sequences: 27780
Number of extensions: 365387
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)