Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_O23
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 72 4e-14
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.0
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 26 2.6
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 3.5
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 4.6
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 4.6
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 6.1
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 6.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.0
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 8.0
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 72.1 bits (169), Expect = 4e-14
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Frame = +2
Query: 80 LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVE---SAKWKAWN 250
+ F+Q A V+ K P+ DE L LY+L+KQAT+GD N +P GL++ KW AW
Sbjct: 1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWE 59
Query: 251 SRKGISQDDAKKQYIENAEKLHSKY 325
KG S++DA +YI ++L +KY
Sbjct: 60 ELKGKSKEDAASEYISFVDELKTKY 84
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 2.0
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 333 IYAYLEWSFSAFS-MYCFLASSWEMP 259
++ +L W + + +YCF SSW+ P
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEP 4068
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 204 AMLTSPMVACLYREYSARFSSSLGLVFQFLTLSA 103
AML+SP + ++YS F S ++ Q L ++A
Sbjct: 73 AMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTA 106
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 116 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSG 217
RNW+T DD +LA + K++ +++ ++ G
Sbjct: 531 RNWQTTVFDDSDLATMGVNKESLSNEMDYSKSLG 564
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 161 YSLYKQATIGDVNIAQPSGLVESAKW 238
Y L+ + + D+N A+ +VESAKW
Sbjct: 150 YKLF-DSYVYDINTAEQERVVESAKW 174
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 104 ADKVRNWKTKPSDDENLALYSLYK 175
A+ V NW + +D ENL++ S ++
Sbjct: 526 AENVNNWMLETNDHENLSMQSHFE 549
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 249 FHAFHLALSTRPLGWAMLTSPMV 181
FHA L L +RP G+ + +P++
Sbjct: 304 FHAVRLTLRSRPAGFGLRCNPIL 326
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 199 HCPAQRSCGERQVEGMEQSQRHLPRRCQE 285
+CPAQR G V G S+R + + +E
Sbjct: 486 YCPAQREYGRLNVVGTLMSKRKIMKLVKE 514
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 187 YGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHFVLSFEIRR 47
+ +L + + I+ + P+L+ F LLV+ VL FE +R
Sbjct: 2805 FKTLFISFTEEHRKIINMMVFTTPSLMSGSFSLLVKNPKVLEFENKR 2851
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 336 IIYAYLEWSFSAFSMYCFLASSWEMPLRLFHAF 238
+ YAY E S A+ + F+ S+ +PL L H F
Sbjct: 120 LYYAYGE-SIYAYFHHLFIMDSFMLPLVLHHRF 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,124
Number of Sequences: 5004
Number of extensions: 37835
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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