Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_O17
         (340 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6NMA9 Cluster: Uncharacterized protein C2orf3; n=1; Ho...    33   0.95 
UniRef50_P16383 Cluster: GC-rich sequence DNA-binding factor; n=...    33   0.95 

>UniRef50_A6NMA9 Cluster: Uncharacterized protein C2orf3; n=1; Homo
           sapiens|Rep: Uncharacterized protein C2orf3 - Homo
           sapiens (Human)
          Length = 768

 Score = 33.5 bits (73), Expect = 0.95
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 73  TNREHLYV*GEYTTRTMSSKMSTIRTIQMSTNGDKNCKLFKIME 204
           T+R HL    +Y     SSK STI+ ++ S+N   NCK +K M+
Sbjct: 272 THRSHLREYEKYVQDVKSSK-STIQNLESSSNQALNCKFYKSMK 314


>UniRef50_P16383 Cluster: GC-rich sequence DNA-binding factor; n=15;
           Amniota|Rep: GC-rich sequence DNA-binding factor - Homo
           sapiens (Human)
          Length = 781

 Score = 33.5 bits (73), Expect = 0.95
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 73  TNREHLYV*GEYTTRTMSSKMSTIRTIQMSTNGDKNCKLFKIME 204
           T+R HL    +Y     SSK STI+ ++ S+N   NCK +K M+
Sbjct: 285 THRSHLREYEKYVQDVKSSK-STIQNLESSSNQALNCKFYKSMK 327


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,042,857
Number of Sequences: 1657284
Number of extensions: 2988101
Number of successful extensions: 5111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5110
length of database: 575,637,011
effective HSP length: 88
effective length of database: 429,796,019
effective search space used: 10315104456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)