Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_O17
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    24   5.5  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    24   7.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.3  

>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 177 FVSIRRHLNSSYCRHLRRH 121
           F+S+R + N  Y  H RRH
Sbjct: 796 FLSVRLNYNEFYVSHRRRH 814


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 237 TVVAFILINLLFHYFE*LTVFVSI 166
           T V  +LI ++ H F  L +F+SI
Sbjct: 49  TSVGLLLITIICHLFLLLNIFISI 72


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 132 DVYNKNYSNVDEWRQKL 182
           DV+NK      EW+QKL
Sbjct: 285 DVHNKRLDAWSEWKQKL 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,566
Number of Sequences: 5004
Number of extensions: 12536
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)