Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_O12
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...    26   6.8  
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...    26   6.8  

>Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical
           protein K03B8.1 protein.
          Length = 451

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 212 NIFKFQFNYNQMKRQPTDQSRNQYLFFYLNL 120
           N+FKF  N  + + +  ++S+  Y +FY +L
Sbjct: 3   NLFKFSLNCIKYRSENLEKSKMFYQYFYFHL 33


>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 239 ISYLFLIKKNIFKFQFNYNQMKRQPTDQSRNQYLFFYLNLLEAE*SWFIHNEIT 78
           IS  F ++K   +F    NQ +    D  + +Y  F +NL+++       +E+T
Sbjct: 75  ISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVT 128


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 239 ISYLFLIKKNIFKFQFNYNQMKRQPTDQSRNQYLFFYLNLLEAE*SWFIHNEIT 78
           IS  F ++K   +F    NQ +    D  + +Y  F +NL+++       +E+T
Sbjct: 75  ISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVT 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,901,437
Number of Sequences: 27780
Number of extensions: 79458
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)