Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_O09
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 74 1e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 70 3e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 6e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 6e-07
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 45 1e-05
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 41 1e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 0.002
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 29 0.74
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 3.0
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 6.9
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 9.1
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 74.1 bits (174), Expect = 1e-14
Identities = 52/164 (31%), Positives = 79/164 (48%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
+EI AL D G + G+A +D P+A P++VG P H + G + Q S
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG-RPRHH------GIMVG-MGQKDSYV 54
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V+NWD K+ + N +R E HP L
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLL 105
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ ++IF APAF++ AVL A+G++T
Sbjct: 106 TEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTT 149
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 69.7 bits (163), Expect = 3e-13
Identities = 45/164 (27%), Positives = 72/164 (43%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
+EI +L DPG R GYA E++P +P+ GV S
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVR---------------------SDV 46
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
++ +D ++H P PGMEV+ +G + +W+ + ++ + ++
Sbjct: 47 TGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMI 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TE W + VR ++ E F + PAF+L AV VA A KST
Sbjct: 107 TEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKST 150
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 68.9 bits (161), Expect = 6e-13
Identities = 46/167 (27%), Positives = 72/167 (43%)
Frame = +2
Query: 131 YGGDEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXG 310
YGGDE+ A+ DPG R+G++ ED PK +P+ G + DG
Sbjct: 6 YGGDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG------------EFSDG------ 47
Query: 311 SKAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHP 490
R ++ PGME++ +++G V+NWD+ + +++ HP
Sbjct: 48 -------RRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
Query: 491 VLFTEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
+L TE R K E +F + PA +L A A+GK T
Sbjct: 101 ILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGT 147
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.8 bits (111), Expect = 6e-07
Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Frame = +2
Query: 155 LXFDPGHHSLRVGYAQEDTPKADIPAVVGV-------GPATHI-PNSEEKVPDGNITQXG 310
+ D G ++GYA D P P V+ GPA P+ G+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSS-- 65
Query: 311 SKAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHP 490
+A +L +I L G + ++ GQ++NWD + +R E H
Sbjct: 66 KRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHY 125
Query: 491 VLFTEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
L TE R+ AE++F ++ AVL A+ S+
Sbjct: 126 FLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSS 172
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 44.8 bits (101), Expect = 1e-05
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 1/160 (0%)
Frame = +2
Query: 155 LXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKAGSELR 334
+ D G ++ G+A +D PK P VG E+V +I Q GSE +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVG-------RIKHERVMPSSI-QKDMFVGSEAQ 63
Query: 335 HYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNV-IRSPSEHHPVLFTEAV 511
+ R +++Q ++ G + NW ++ YS+ + + E HP+L TE
Sbjct: 64 NL---------RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPP 114
Query: 512 WATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
A ++K+AE + PA VL A+ ++T
Sbjct: 115 LANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTT 154
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 41.1 bits (92), Expect = 1e-04
Identities = 36/163 (22%), Positives = 73/163 (44%)
Frame = +2
Query: 143 EIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKAG 322
E + D G ++VGYA+++ P+ P++VG I +EEK GN+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVG----RPILRAEEKT--GNV-------- 47
Query: 323 SELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLFT 502
+++ + E R ++V+ M++G + +++ ++ D + ++ +L T
Sbjct: 48 -QIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLT 106
Query: 503 EAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
E R+K+ E +F + ++ AVL A G S+
Sbjct: 107 EPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSS 149
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.1 bits (82), Expect = 0.002
Identities = 38/162 (23%), Positives = 62/162 (38%)
Frame = +2
Query: 92 IKEYIMSGPNGMLYGGDEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNS 271
++E + SGP L D G LR G+ E PK +V
Sbjct: 6 VREPVFSGPTPSFQNVSNDIPLVIDNGSWQLRAGWGGEKDPKLVFDNLVS---------- 55
Query: 272 EEKVPDGNITQXGSKAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXC 451
+ D +++ + G++ I+V + R E + NWDL ++LD
Sbjct: 56 --RYRDRKLSRTSTLVGNDT--LIEVGSRSIARSPFERNV------ISNWDLMEQVLDYT 105
Query: 452 YSNVIRSPSEHHPVLFTEAVWATRPVRDKLAELIFXKXQAPA 577
+ + EH P+ TE + VR + EL+F AP+
Sbjct: 106 FLKLGIDRMEH-PICMTEPLANPTYVRSTMTELLFELYNAPS 146
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 224 IPAVVGVGPATHIPNSEEKVPDGNITQXGSKAGSELRHYIDVTELHVPRPGMEVQTYMKD 403
+P+ +G A + V DG+ G + +RH + V + G ++ + D
Sbjct: 425 VPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVLIFLLNNRGYTIEIQIHD 484
Query: 404 G---QVDNWD 424
G ++ NWD
Sbjct: 485 GPYNRIQNWD 494
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 212 PKADIPAVVGVGPATHIPNSEEKVPD 289
PKAD+ +V VG +T IP + V D
Sbjct: 329 PKADVHDIVLVGGSTRIPKVQRLVSD 354
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 337 VSQLTACFTAGLSDVAIRNLFFGIWDVCSWPD 242
+ Q+T G++D+ N F+ + D SW D
Sbjct: 863 IQQVTFFLAVGMADIVTINFFYLVKDEGSWKD 894
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 479 EHHPVLFTEAVWATRPVRDKLAEL 550
EHHPVL T ++++ P+ + L L
Sbjct: 705 EHHPVLSTVSLFSDNPMYEDLLAL 728
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 266 NSEEKVPDGNITQXGSKAGSELRHYIDVTELHVPRPGMEVQTYMKDG 406
N V DG+I Q K R + + + H+P+ G+ ++ +DG
Sbjct: 265 NFATAVLDGSI-QFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQDG 310
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 260 IPNSE---EKVPDGNITQXGSKAGSELRHYIDVTELHVPR 370
IPN + K + NI Q + AG+ +RH+ + ++VPR
Sbjct: 348 IPNKKTIKHKGENINIIQLETAAGAAIRHFKNAHGVNVPR 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,421
Number of Sequences: 5004
Number of extensions: 50342
Number of successful extensions: 142
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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