Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_O09
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 134 5e-32
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 70 2e-12
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 70 2e-12
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 70 2e-12
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 70 2e-12
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 70 2e-12
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 69 3e-12
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 67 9e-12
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 61 7e-10
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 56 2e-08
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 54 6e-08
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 47 1e-05
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 35 0.042
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 35 0.042
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 34 0.097
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 34 0.097
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 32 0.30
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 1.2
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 1.2
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 30 1.6
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 30 1.6
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 134 bits (324), Expect = 5e-32
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Frame = +2
Query: 119 NGMLYGGDEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSE--EKVPDG 292
+G +YGGDE+ L FD G S RVG+A E+ PK DIP+ + V A E E + +G
Sbjct: 2 SGAVYGGDEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEG 61
Query: 293 NITQXGSKAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRS 472
+ ++ +K E +I T++ VPR ++++MK+G +++W+L K+++ Y N++ S
Sbjct: 62 DNSKVQTKR--EKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYS 119
Query: 473 PSEHHPVLFTEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKS 628
HPVLF+E+ W R R+KL E++F K Q PA++L N VL A G++
Sbjct: 120 NPSEHPVLFSESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRT 171
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
DE+ AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
DE+ AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
DE+ AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
DE+ AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
DE+ AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
DE+ AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 68.9 bits (161), Expect = 3e-12
Identities = 47/164 (28%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
D++ AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 68.5 bits (160), Expect = 4e-12
Identities = 47/164 (28%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
D++ AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 67.3 bits (157), Expect = 9e-12
Identities = 48/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKA 319
+EI AL D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 54
Query: 320 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
G E + + L P ++ G V NWD K+ + N +R E HPVL
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLL 105
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
TEA + R+K+ +++F PA ++ AVL A+G++T
Sbjct: 106 TEAPLNPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRTT 149
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 60.9 bits (141), Expect = 7e-10
Identities = 43/149 (28%), Positives = 69/149 (46%)
Frame = +2
Query: 185 RVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKAGSELRHYIDVTELHV 364
R G+A +D P+A P++VG P + + + Q S G E + + L
Sbjct: 5 RAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYVGDEAQSKRGILTLKY 56
Query: 365 PRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLFTEAVWATRPVRDKLA 544
P ++ G V NWD K+ + N +R E HPVL TEA + R+K+
Sbjct: 57 P---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 107
Query: 545 ELIFXKXQAPAFFLVTNAVLVAXATGKST 631
+++F PA ++ AVL A+G++T
Sbjct: 108 QIMFETFNTPAMYVAIQAVLSLYASGRTT 136
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +2
Query: 395 MKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLFTEAVWATRPVRDKLAELIFXKXQAP 574
++ G V NWD K+ + N +R E HPVL TEA + R+K+ +++F P
Sbjct: 28 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 87
Query: 575 AFFLVTNAVLVAXATGKST 631
A ++ AVL A+G++T
Sbjct: 88 AMYVAIQAVLSLYASGRTT 106
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 54.4 bits (125), Expect = 6e-08
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 1/163 (0%)
Frame = +2
Query: 143 EIGALXFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKAG 322
++ A D G ++GYA P+ IP+ + V NS+ + + AG
Sbjct: 5 QLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVG-----AG 59
Query: 323 -SELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYSNVIRSPSEHHPVLF 499
+L +I L V+ ++ G V++WDL + + C +R+ E H L
Sbjct: 60 IDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLL 119
Query: 500 TEAVWATRPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKS 628
TE T R+ AE++F P ++ AVL A+ S
Sbjct: 120 TEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNS 162
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 395 MKDGQVDNWDLXXKMLDXCYS-NVIRSPSEHHPVLFTEAVWATRPVRDKLAELIFXKXQA 571
M+ G V+NW K+ + + + ++ E HPVL T+A R++ AE+ F
Sbjct: 74 MEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFETFNV 133
Query: 572 PAFFLVTNAVLVAXATGKST 631
PA ++ AVL ATG++T
Sbjct: 134 PALYIQMQAVLSLYATGRTT 153
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVG 241
DE+ AL D G + G+A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVG 241
DE+ AL D G + G+A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 33.9 bits (74), Expect = 0.097
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVG 241
D++ AL D G + G+A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 33.9 bits (74), Expect = 0.097
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 140 DEIGALXFDPGHHSLRVGYAQEDTPKADIPAVVG 241
D++ AL D G + G+A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 32.3 bits (70), Expect = 0.30
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 1/157 (0%)
Frame = +2
Query: 164 DPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQXGSKAGSELRHYI 343
D G ++ GYA + P P++VG I S ++V GNI G E
Sbjct: 12 DNGTGFVKCGYAGTNFPAHIFPSMVG----RPIVRSTQRV--GNIEIKDLMVGEECSQLR 65
Query: 344 DVTELHVPRPGMEVQTYMKDGQVDNWDLXXKMLDXCYS-NVIRSPSEHHPVLFTEAVWAT 520
+ +++ P M +G V NWD + D + + + +L TE
Sbjct: 66 QMLDINYP---------MDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNP 116
Query: 521 RPVRDKLAELIFXKXQAPAFFLVTNAVLVAXATGKST 631
R+K+ +++F + + ++ AVL A G T
Sbjct: 117 NSNREKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLT 153
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 257 HIPNSEEKVPDGNITQXGSK---AGSELRHYIDVTELHVPRPGMEVQTYMKDGQV 412
++ +E V G+ G+K A +LR++ +LH+ +PG V+ +MKDG +
Sbjct: 392 NVDKLQELVNRGDTQYPGAKENGARVDLRYHPRAADLHL-QPGYRVERHMKDGDI 445
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 257 HIPNSEEKVPDGNITQXGSK---AGSELRHYIDVTELHVPRPGMEVQTYMKDGQV 412
++ +E V G+ G+K A +LR++ +LH+ +PG V+ +MKDG +
Sbjct: 392 NVDKLQELVNRGDTQYPGAKENGARVDLRYHPRAADLHL-QPGYRVERHMKDGDI 445
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 200 QEDTPKADIPAVVGVGPATHIP----NSEEKVPDGNITQXGSKAGSELRHYIDV 349
+E PKAD+ ++ V HIP EE++PD N + G + L +++
Sbjct: 494 EEKEPKADVRRLMIVCHELHIPLLHHTLEERIPDSNSAELGLPKAAVLEQLLEL 547
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 200 QEDTPKADIPAVVGVGPATHIP----NSEEKVPDGNITQXGSKAGSELRHYIDV 349
+E PKAD+ ++ V HIP EE++PD N + G + L +++
Sbjct: 494 EEKEPKADVRRLMIVCHELHIPLLHHTLEERIPDSNSAELGLPKAAVLEQLLEL 547
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,995
Number of Sequences: 27780
Number of extensions: 300692
Number of successful extensions: 668
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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