Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N22
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    31   0.21 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.83 
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    28   1.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.4  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.8  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   7.8  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/82 (21%), Positives = 38/82 (46%)
 Frame = +2

Query: 176 TLQKVKKNMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQ 355
           T   V+    TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR  
Sbjct: 720 TFHFVENPKATIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKS 779

Query: 356 AGFLSAIVGAGLMLMLIATPDN 421
             +   IVG  ++   + TP+N
Sbjct: 780 DPYARVIVGNSVVARTVYTPNN 801


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 262 NWWFQSILKAVDKGLKIYCIHVFFYFLK 179
           NWW++S +     G+ ++   VF++F K
Sbjct: 553 NWWWRSFITPGFCGIYVFIFSVFYWFFK 580


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 221 FENLLYSCFFLLSEGSLNNDFNNMIYVILFEV*NIYSFQYDATTVFKFHKSQ*NKQII 48
           +  L Y  +  L++  L+ D N    + +F+V      Q D  T+  + KS+  KQI+
Sbjct: 67  YMKLKYGSYRALADNILSTDENRKEDIAVFDVPLPNGLQIDTFTLCLYRKSKWKKQIV 124


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 176  TLQKVKKNMNTINFQTFVNSFQNRLEP 256
            TLQ  K N +T NF ++VN +    +P
Sbjct: 2171 TLQVFKSNEDTCNFYSYVNEYGESPKP 2197


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -2

Query: 272 DADELVVPVDSESC*QRFENLLYSC----FFLLSEGSLNNDFNNMIYVILFEV*NIYSF 108
           + D+  +    E C  + EN L+S      FLL   SL+ND +N++ V      NI +F
Sbjct: 386 EIDQTTLRAFGEICTGKLENTLFSNSELNLFLLHYLSLDNDLSNILKVDFQNGHNICTF 444


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -1

Query: 642 NSVINVPPRNSQL--PRSASIAAAEKHTNTRV--VPSRAVIMIDGSTTLTYS--SRGPML 481
           N+ + +PPR +     R +++  +    ++ V  VPS +   ++  TT   S  SR PML
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377

Query: 480 MPDVNPNPS 454
           M    P PS
Sbjct: 378 MNPSTPEPS 386


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 161 NHCLKTLQKVKKNMNTINFQTFVNSFQNRLE 253
           NH  KT+QK+K+    I  +     F  R++
Sbjct: 185 NHIAKTIQKIKEKAPHILVEALTPDFSGRMD 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,217
Number of Sequences: 5004
Number of extensions: 56920
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)