Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N20
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    52   1e-07
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    27   3.2  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   4.3  
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    27   4.3  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   4.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   5.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.9  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   9.9  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 26/75 (34%), Positives = 36/75 (48%)
 Frame = +1

Query: 37  PXLIXSSGPR*QPANWVSKINTPAFTRSXKRQXFYLHQFCDNCADLNFDNPKVVEKFDMV 216
           P      G R  P NW S  +T A+      Q +YLH +     DLN++ PKV E    +
Sbjct: 138 PARYNEKGERLPPNNWRSYFDTSAWEWDEATQEYYLHLWSVGQPDLNWETPKVREAVHDI 197

Query: 217 LKAWMGAGASGVRLN 261
           L+ W+  G  G RL+
Sbjct: 198 LRFWLDRGVDGFRLD 212


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 355 WEHKHTTDLPKLKELLARWSK 417
           W+H    ++P+L +L+++W K
Sbjct: 69  WQHFEVGNVPRLSQLVSKWEK 89


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 292 EEKTRVGRGSSVDADHMRYDFWEHKHTTDLPKLKELLA 405
           EE+  V      DA    +DF+E K    + KL EL A
Sbjct: 387 EERLPVSSQPGSDAKSQEFDFFEAKIPDSIAKLNELTA 424


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 169 DLNFDNPKVVEKFDMVLKAWMGAGASGVR--LNNA-RHLLVELLEEKTRVGRGSSVDADH 339
           D N DNPK  + FD++ KA        +R  L++A      +LL+EK        V +D 
Sbjct: 61  DKNRDNPKAADAFDILKKAESDLVNDKIRESLDSAYTAARNQLLKEKKLSPNSEDVHSDQ 120

Query: 340 MRYD 351
             +D
Sbjct: 121 FLFD 124


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 388 LKELLARWSKIVTKESEPTVFTLKEDGSLPDLILLNHNVSMLRPPSAAPV 537
           LK+L  R++KI  + S+P V   +   + PDL+  N  +S+    +  PV
Sbjct: 617 LKDLRERFAKIEIQASQPLVPYRETTIATPDLLAKNKELSIGFVTATLPV 666


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = -3

Query: 494 FSSIRSGREPSSFSVNTVGSDSLVTIFDQRAKSSLSFGRSVVCLCSQKSYRM*SASTLLP 315
           FSS  +    +  S ++  S S  +     +KSS SF  +V    S  S  + S+S+   
Sbjct: 332 FSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSS 391

Query: 314 RPTRVFSSSNSTS 276
           RP    S S+S S
Sbjct: 392 RPASSSSHSSSLS 404


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 382 PKLKELLARWSKIVTKESEPTVFTLKEDGSLP 477
           P LKEL+A   K+VTKE+  +     E+ SLP
Sbjct: 255 PNLKELIASSRKVVTKETASSKRKSDEE-SLP 285


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 499 NVSMLRPPSAA-PVPVTEDADALASR 573
           N S ++PPSAA PVP  E+ +A+ S+
Sbjct: 152 NNSNIQPPSAAPPVPGKENYNAVGSK 177


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 454 LKEDGSLPDLILLNHNVSMLRPPSAAPVPVTEDADALAS 570
           L++  +LP  + L  +    +PPSAA V V  D   L +
Sbjct: 207 LQDVSTLPPSMTLEKDPKFPQPPSAAEVAVVHDGPFLVA 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,575
Number of Sequences: 5004
Number of extensions: 43366
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)