Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N20
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z93391-8|CAB07684.2|  397|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    28   7.1  
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    28   7.1  

>Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.5 protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 761 CDNEASLRRFTRSKREVSFSSAESCFIFNKGAAGRS 654
           C+   +L +  RSK+  SFSS  S  +FN  A+G S
Sbjct: 194 CNYVGNLYQMYRSKKPYSFSSEGSIVVFNLAASGNS 229


>Z93391-8|CAB07684.2|  397|Caenorhabditis elegans Hypothetical
           protein W04G5.8 protein.
          Length = 397

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +1

Query: 277 LVELLEEKTRVGRGSSVDADHMRYDFWEHKHTTDLPKLKELLARWSKIVTKESEPTVFTL 456
           L+EL ++ T++    S + D ++    EH+   DL +    L ++ +   K+     + +
Sbjct: 59  LIELDKKITQLSDKMSWEFDSLKAFIVEHEFYADLVQTASTLMKFMQDTVKDPCKDSYAI 118

Query: 457 KEDGS--LPDLILLNHNVSMLRPPSAAPVPVTEDADALASRINKTLGSW 597
             D S   P L      +S+L   S  P+ +   AD L  R ++T   W
Sbjct: 119 FRDVSQKSPPLQYAYKMISLLEQESTNPLKMAMKADPL--RTSETFDKW 165


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +1

Query: 268 RHLLVELLEEKTRVGRGSSVDADHMRYDFWEHKHTTDLPKLKELLARWSKIVTKESEPTV 447
           R+L++E+   K          A ++   F + KH  D  K+KEL+ +W  +     + + 
Sbjct: 509 RNLILEINSSKLACNVTMDEVARNVFAAFMKLKHNQDFNKMKELIVKWQPLFLNYYKTSA 568

Query: 448 FTLK 459
            +LK
Sbjct: 569 ESLK 572


>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 250 VRLNNARHLLVELLEEKTRVG---RGSSVDADHMRYDF 354
           +R ++A HLL   L+ K  VG   +GSSVD D  R+D+
Sbjct: 591 MRAHSATHLLNWALQ-KLGVGSGQKGSSVDCDRFRFDY 627


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 250 VRLNNARHLLVELLEEKTRVG---RGSSVDADHMRYDF 354
           +R ++A HLL   L+ K  VG   +GSSVD D  R+D+
Sbjct: 591 MRAHSATHLLNWALQ-KLGVGSGQKGSSVDCDRFRFDY 627


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,741
Number of Sequences: 27780
Number of extensions: 248404
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)