Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_N17
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 125 6e-30
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 36 0.004
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 27 2.3
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.1
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 3.1
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 26 4.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 4.1
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 26 5.4
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 25 7.2
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 7.2
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.5
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 9.5
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 125 bits (301), Expect = 6e-30
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 5/149 (3%)
Frame = +3
Query: 210 LQEFKLDPDSELRFEVESKNEKVVLEVKSGYAELFGTELVKGKPYEFHTGAKVAVFTWHG 389
++E + + E RFEV+ + + + SG AE FGTEL G PY F T K A++TW G
Sbjct: 1 MKEIFIPKECEWRFEVDEP--AIQIRLVSGNAEYFGTELALGPPYHF-TRVKGAIYTWQG 57
Query: 390 CTIELRGKTEVSYVAKETPMIVYLNVHAALEQQRV-----AAEQENTRGPVTMIVGPADV 554
CT+E+ G+ V YVA+ETPM YLN+H ALE R+ AA E++ GP ++GP
Sbjct: 58 CTLEVEGEPSVEYVAEETPMSTYLNLHFALEGLRLQAENAAANDESSYGPCVCLIGPRSC 117
Query: 555 GKSTLSRILLNYAVRMGRRPIYVDLDVGQ 641
GK+++ +IL +YA++ R PI V+LD Q
Sbjct: 118 GKTSVLKILESYALKQSRHPICVNLDPTQ 146
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 522 PVTMIVGPADVGKSTLSRILLNYAVRMGRRPIYVDLDVGQ 641
P M+ GP GKS+ SR + N ++ R Y+DLD GQ
Sbjct: 332 PRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQ 371
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 408 GKTEVSYVAKETPMIVYLNVHAALEQQRVAAEQENTRGPVTMIVGPADVGKSTLSRILLN 587
G V Y +E IV ++A + ++Q + PVT+ A++ S +SR++L
Sbjct: 307 GPNAVIYFLEENSEIVLNTLYAVTKNAEGWSKQYGS-SPVTVDSAAANIVSSGISRVIL- 364
Query: 588 YAVRMGRRPIYVDLD 632
R+G P + +D
Sbjct: 365 --TRVGNGPRVLTID 377
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 348 IRMAFLSPVLYRIIQHIHFLPLRRLFRSSIL 256
I AF++P LY + I FLP R ++ S L
Sbjct: 147 IGSAFITPALYFTLTLILFLPRRNIYSISTL 177
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 519 GPVTMIVGPADVGKSTLSRILLNY 590
G + I+GP+ GKST +LL Y
Sbjct: 462 GELVHIIGPSGSGKSTFISLLLRY 485
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 519 GPVTMIVGPADVGKSTLSRILLNY 590
G V +VG + GKST+ RILL +
Sbjct: 610 GKVIALVGESGGGKSTIMRILLRF 633
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/59 (22%), Positives = 23/59 (38%)
Frame = +2
Query: 419 SQLCSQRNTDDSVPERTCSIRTAKSCCRTREHKRSGNNDSWACRCWQVHTLKDPFELCC 595
S CS++++ S CS + KSCC +++ C + + CC
Sbjct: 223 SSCCSKKDSSPSEKPSCCS-QEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCC 280
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/91 (27%), Positives = 46/91 (50%)
Frame = -3
Query: 568 SVDLPTSAGPTIIVTGPLVFSCSAATLCCSNAACTFRYTIIGVSLAT*LTSVFPLSSIVH 389
S LPT++ +++VT + S+AT + T YT+ V+ + P+S+
Sbjct: 79 STALPTTSTESVVVTTSAPAASSSATSYPATFVSTPLYTMDNVTAPVWSNTSVPVST--- 135
Query: 388 PCQVNTATLAPVWNSYGFPFTSSVPNNSAYP 296
P + + + + + SY P TSS ++S+YP
Sbjct: 136 P-ETSATSSSEFFTSY--PATSS-ESSSSYP 162
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 403 SSIVHPCQVNTATLAPVWNSYGFPFTSSVPN 311
+SIV +N T+ PVW S F S++PN
Sbjct: 97 NSIVDSIHINADTVLPVW-SEAFSPKSTLPN 126
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 534 IVGPADVGKSTLSRILLNYAVRMGRRPIYVDLD 632
+ G A GKST L++Y +GR V+LD
Sbjct: 8 VCGVASSGKSTFCGALMSYMKSVGRSCHLVNLD 40
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 516 RGPVTMIVGPADVGKSTLSRILLNYAVR---MGRRPIYVDLDVGQ 641
RG + GP GKSTL R ++N V R +YV+ D+ +
Sbjct: 459 RGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLRTVYVEHDIDE 503
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 531 MIVGPADVGKSTLSRILLNYAVRMGRRPIYVDLD 632
++VGP GKST + +GR I V+LD
Sbjct: 6 VVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLD 39
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 531 MIVGPADVGKST-LSRILLNYAVRMG 605
++ GP+ VGKST L R+L ++ ++G
Sbjct: 22 VVFGPSGVGKSTLLKRLLKDHGDKLG 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,837
Number of Sequences: 5004
Number of extensions: 44288
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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