Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_N17
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34801-6|CAA84329.1| 428|Caenorhabditis elegans Hypothetical pr... 167 8e-42
Z83114-1|CAB63234.1| 549|Caenorhabditis elegans Hypothetical pr... 31 0.94
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 31 0.94
AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical... 31 0.94
Z81044-9|CAB02812.2| 677|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical pr... 29 3.8
U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical p... 28 6.6
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 28 6.6
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 27 8.7
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 27 8.7
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 27 8.7
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z34801-6|CAA84329.1| 428|Caenorhabditis elegans Hypothetical
protein F59A2.4a protein.
Length = 428
Score = 167 bits (405), Expect = 8e-42
Identities = 82/158 (51%), Positives = 109/158 (68%), Gaps = 6/158 (3%)
Frame = +3
Query: 195 MTEVQLQEFKLDPDSELRFEVESKNEKVVLEVKSGYAELFGTELVKGKPYEFHTGAKVAV 374
M+E +QEF L D ELRF ++ V LE+ GYAE+FGTEL+ K Y F ++VA
Sbjct: 1 MSEENVQEFVLKEDCELRFAAGDDSD-VCLELVKGYAEIFGTELLLNKKYTFPAKSRVAA 59
Query: 375 FTWHGCTIELRGKTEVSYVAKETPMIVYLNVHAALEQQRVAAEQE------NTRGPVTMI 536
FTW G TIEL G TE +YVA+ TPM++YLN+HAA+E+ R E++ +GP ++
Sbjct: 60 FTWKGATIELVGTTESAYVAESTPMVIYLNIHAAMEEVRKKREEQAAGNSNKAKGPRLLL 119
Query: 537 VGPADVGKSTLSRILLNYAVRMGRRPIYVDLDVGQGXI 650
VGP DVGK+T+SRIL NY+VR GR PI+V+LDVGQ +
Sbjct: 120 VGPTDVGKTTVSRILCNYSVRQGRTPIFVELDVGQNSV 157
>Z83114-1|CAB63234.1| 549|Caenorhabditis elegans Hypothetical
protein K09B11.2 protein.
Length = 549
Score = 30.7 bits (66), Expect = 0.94
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 426 YVAKETPMIVYLNVHAALEQQRVAAEQENTRGPVTMI--VGPADVGKSTLSRILLNYAVR 599
+++++ +I A L+ Q + G T I +G GKS L R L+N +
Sbjct: 150 FISRDDFIIYPQQQEAQLKSQMNRLNKLRNDGQRTTILPIGHKGAGKSNLMRSLVNRCLS 209
Query: 600 MGRRPIYV-DLDVGQ 641
G +YV D D+GQ
Sbjct: 210 NGYEHVYVLDCDIGQ 224
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 531 MIVGPADVGKSTLSRILLNYAVRMGRRPIYVDLD 632
+++GPA GKST ++ N+ + GR V+LD
Sbjct: 6 LVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLD 39
>AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical
protein Y61A9LA.10 protein.
Length = 986
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 525 VTMIVGPADVGKSTLSRILLNYAVRMG 605
+ IVGP+ VGK+TL R L+ Y +R G
Sbjct: 12 IVAIVGPSKVGKTTLLRGLVKYYLRDG 38
>Z81044-9|CAB02812.2| 677|Caenorhabditis elegans Hypothetical
protein C30H6.6 protein.
Length = 677
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 516 RGPVTMIVGPADVGKSTLSRILL 584
RG +T ++GP+ GKS+++ ++L
Sbjct: 438 RGKITAVIGPSGSGKSSIANLML 460
>Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical
protein R11D1.1b protein.
Length = 622
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 419 SQLCSQRNTDDSVPERTCSIRTAKSCCRTREHKRSGNNDSWACRCWQVHTLKDPF 583
SQ C +D + P C+I+T KS ++ + +D W W++ D +
Sbjct: 285 SQRCFVLKSDHN-PNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSY 338
>Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical
protein R11D1.1a protein.
Length = 621
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 419 SQLCSQRNTDDSVPERTCSIRTAKSCCRTREHKRSGNNDSWACRCWQVHTLKDPF 583
SQ C +D + P C+I+T KS ++ + +D W W++ D +
Sbjct: 284 SQRCFVLKSDHN-PNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSY 337
>U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical
protein ZK1248.10 protein.
Length = 908
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 219 FKLDPDSELRFEVESKNEKVVLEVKS 296
F DP + RFE+ S NE + LE S
Sbjct: 73 FTYDPREKGRFEIHSNNEVIALECSS 98
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 519 GPVTMIVGPADVGKSTLSRIL 581
G VT I+GP+ GK+TL +L
Sbjct: 92 GEVTAIIGPSGAGKTTLLNVL 112
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 320 RTGERKAIRIPHWC*SCCVYLARMYYRT*RKN*SQLCSQRNTD-DSVPERTCSIRTAKSC 496
R+GE K+ R P W +R R ++ S+ S+R T D +R+ R +S
Sbjct: 14 RSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSH 73
Query: 497 CRTREHKRSGNNDS-WA 544
R+R S N S W+
Sbjct: 74 SRSRSPPSSANGSSHWS 90
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 320 RTGERKAIRIPHWC*SCCVYLARMYYRT*RKN*SQLCSQRNTD-DSVPERTCSIRTAKSC 496
R+GE K+ R P W +R R ++ S+ S+R T D +R+ R +S
Sbjct: 42 RSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSH 101
Query: 497 CRTREHKRSGNNDS-WA 544
R+R S N S W+
Sbjct: 102 SRSRSPPSSANGSSHWS 118
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 320 RTGERKAIRIPHWC*SCCVYLARMYYRT*RKN*SQLCSQRNTD-DSVPERTCSIRTAKSC 496
R+GE K+ R P W +R R ++ S+ S+R T D +R+ R +S
Sbjct: 100 RSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSH 159
Query: 497 CRTREHKRSGNNDS-WA 544
R+R S N S W+
Sbjct: 160 SRSRSPPSSANGSSHWS 176
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 320 RTGERKAIRIPHWC*SCCVYLARMYYRT*RKN*SQLCSQRNTD-DSVPERTCSIRTAKSC 496
R+GE K+ R P W +R R ++ S+ S+R T D +R+ R +S
Sbjct: 101 RSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSH 160
Query: 497 CRTREHKRSGNNDS-WA 544
R+R S N S W+
Sbjct: 161 SRSRSPPSSANGSSHWS 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,127
Number of Sequences: 27780
Number of extensions: 258570
Number of successful extensions: 936
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -