Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_N13
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 33 0.033
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.41
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 26 5.0
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 26 6.6
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 8.8
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 33.5 bits (73), Expect = 0.033
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Frame = +1
Query: 295 CRSHQTCVNQHCVNPCEGTCGINANCD-VRNHIP-VCTCPAGYTGNPFSSCRIADPEEAC 468
C+S+QT + H + C CG + V+N +P C P G T C P C
Sbjct: 246 CQSNQTETSLHYL--C--WCGKQEKPEFVKNLVPHSCGDPCGKTRG--QDCEHPCPL-LC 298
Query: 469 HPSPCGPNTK-------CHVANNQAICTCLPGYRGSPLSGCRHECESDGECGAQQSCRDF 627
HP PC P T C + A C+ + P C + C+ CG + +C+
Sbjct: 299 HPGPCPPCTATVEKFCLCGKESIHARCSNISKVNTEPFR-CENVCDELLPCG-EHTCKK- 355
Query: 628 KCVSP-CSDC--GVNADC 672
+C S C C +NA C
Sbjct: 356 RCHSGLCGACFEPINAKC 373
Score = 25.4 bits (53), Expect = 8.8
Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 6/179 (3%)
Frame = +1
Query: 136 SISDNLVTCGPHTCGVGAHC-IHGS-VRPVCA-CLAGYSGDPLSQCIKIECLDNSECRSH 306
++ D L+ CG HTC H + G+ P+ A C G C + S+ +
Sbjct: 340 NVCDELLPCGEHTCKKRCHSGLCGACFEPINAKCYCGLHSKTY-PCSSLPSPSISKKDEN 398
Query: 307 QTCVNQHCVNPCEGTCGINANCDVRNHIPVCTCPAGYTGNPFSSCRIADP--EEACHPSP 480
+ C C + +C + C +P S R P + P
Sbjct: 399 GSVKEWFGYYSCNNPCTLFFDCGLHKCSKTC--------HPISETRAHCPFATDVLTKCP 450
Query: 481 CGPNTKCHVANNQAICTCLPGYRGSPLSGCRHECESDGECGAQQSCRDFKC-VSPCSDC 654
CG + +C P+ C + C CG C+ +KC + C C
Sbjct: 451 CGKEDISFLLKGHERKSC-----SDPIPTCENICGKLLSCG--HRCK-YKCHLGSCGTC 501
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +1
Query: 577 ECESD--GECGAQQSCRDFKCVSPC---SDCGVNADCETVAAHRAVCKCPR 714
ECES ECG ++ + C SPC C C+ A C+C R
Sbjct: 722 ECESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIPCK--APLEVSCECGR 770
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.9 bits (64), Expect = 0.41
Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 15/230 (6%)
Frame = +2
Query: 65 SALMLNVTXILEATSVVICMSMGVRYPTTWSRV--DLTPVE*EHTASTEVFDLCALVWLV 238
S+ +LN + + ++S+V + P T S V TP+ T +T + V
Sbjct: 3170 SSSVLNSSTAITSSSIVNSST-----PITSSSVLNSSTPITSSTTLNTSTPITSSSVLNS 3224
Query: 239 TLAIRCLSVLKSSALIT------ASVAVTRPALI--STA*TPARALAASTPIVMSVTTSQ 394
+ AI SVL SS IT +S +T ++ ST T + L +STPI S +
Sbjct: 3225 STAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNT 3284
Query: 395 YARVRLDTQEILS---RHAESLILKRPVIHHRVVPTPNAMSQITRLSVPAYPVIEAAL-- 559
+ T S + +L P+ V+ + A++ T L+ + P+ +++
Sbjct: 3285 STPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNT-STPITSSSVLN 3343
Query: 560 *ADVVTSASLMASAVHSSPAGISSVXXXXXXXXXXXXVKPSRHIAPSASV 709
+ +TS+S++ S S+P SSV V S I S ++
Sbjct: 3344 SSTAITSSSILNS---STPVTSSSVLNSSTPITSSTVVNSSTPITSSTAL 3390
Score = 26.2 bits (55), Expect = 5.0
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Frame = +2
Query: 260 SVLKSSALITASVA------VTRPALI--STA*TPARALAASTPI----VMSVTTSQYAR 403
SVL SS IT+S A +T +++ STA T + AL STPI V++ +T +
Sbjct: 676 SVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSS 735
Query: 404 VRLDTQEILSRHAESLILKRPVIHHRVVPTPNAMSQITRLSV--PAYPVIEAAL*ADVVT 577
L+T ++ + L P+ ++ N+ + IT SV + P+ + + V T
Sbjct: 736 TALNTSTPIT-SSSVLNSSTPITSSSIL---NSSTPITSSSVLNSSTPITSSTV---VNT 788
Query: 578 SASLMASAVHSSPAGISS 631
S + +S+V +S I+S
Sbjct: 789 STPITSSSVLNSSTPITS 806
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 266 LKSSALITASVAVTRPALI--STA*TPARALAASTPIVMS 379
+ SS+++ S +T +++ STA T + AL STPI S
Sbjct: 996 ITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSS 1035
Score = 25.8 bits (54), Expect = 6.6
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 6/165 (3%)
Frame = +2
Query: 266 LKSSALITASVAVTRPALI--STA*TPARALAASTPIV-MSVTTSQYARVRLDTQEILSR 436
+ SS + S +T +++ STA T + AL STPI SV S A +
Sbjct: 3300 ITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSSSILNSSTP 3359
Query: 437 HAESLIL--KRPVIHHRVVPTPNAMSQITRLSVPAYPVIEAAL*ADV-VTSASLMASAVH 607
S +L P+ VV + ++ T L+ + L + +TS++++ S
Sbjct: 3360 VTSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNS--- 3416
Query: 608 SSPAGISSVXXXXXXXXXXXXVKPSRHIAPSASVLGDIMAILTVS 742
S+P S+ V S I S+SVL AI + S
Sbjct: 3417 STPITSSTALNTSTPITSSTVVNSSTPIT-SSSVLNSSTAIASSS 3460
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 5.0
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Frame = -3
Query: 414 SSRTRAYWDVVTDITIGVDAAS----ALAGVHAVLINAGLVTATLAVIKALDFNTLRQRI 247
SSRTR+ ++TD G A S G VL N L K + T
Sbjct: 102 SSRTRSSSSLITDSAAGATAFSCANKTYNGAVGVLDNEKPCGTILEAAKEAGYLTGIVVT 161
Query: 246 ARVTSQT----SAHRSNTSV-DAVCSYSTGV 169
+RVT T SAH +N + D + Y G+
Sbjct: 162 SRVTDATPASFSAHAANRFMQDLIAEYQVGM 192
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 144 GYRTPMLIQITTEVASRMXVTLSIN 70
G+ P+L+ T V S++ + LS+N
Sbjct: 485 GWNDPLLVSATDGVGSKLLIALSLN 509
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 222 AHRSNTSVDAVCSYSTGVRSTRDQVVGYRTPMLIQITTEVASRMXV 85
AH S V AVCS GVR +Q + + +++ + +R V
Sbjct: 69 AHPSFGQVLAVCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSAV 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,808
Number of Sequences: 5004
Number of extensions: 63525
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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