Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N11
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    33   0.059
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.73 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.7  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   3.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   6.8  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   6.8  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   6.8  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    26   6.8  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    26   6.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.0  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    25   9.0  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   9.0  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
 Frame = +1

Query: 229 RQIAGGSQSGLKKFLAQYPALFSIDGDYVDINTF------QKHLSGAGVSSNNDYIEEAK 390
           +Q     +S   +FL +YP LF     Y D   F       +H+   G++     ++   
Sbjct: 51  KQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWT 110

Query: 391 QYFAGKMIQYGEGTEVPIKSLLGHRSQASPQVRHISGQRIKEFKEFLMKHPDTFQIID 564
            Y A KM   G+  EV    + G        + H    +  EF+E   +  + FQ+++
Sbjct: 111 NYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLE 168


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 158  SSRRSTKNNRVRFLASSYSIDSISLQLVPMCFNLH 54
            S  +   N+++    S+YS+D+IS  L+PM  +LH
Sbjct: 1052 SEPQKVVNSQLELHNSAYSLDAISQNLLPMLKDLH 1086


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 172 RTLHDLSCQFGAKGFTKEMRQIAGGSQSGLKKFLA-QYPALFSIDGDYVD--INT 327
           + LH L  Q    G T  + + A G   G+K  +A +YP  FS   DY+D  INT
Sbjct: 470 KVLHSLVFQ-NELGLTNTVWEAAHGGMLGIKYLVAVKYPLFFS-HSDYLDSLINT 522


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 463 RSQASPQVRHISGQRIKEFKEFLMKHPDTFQIIDDNVVLVSENHRRDNAHT 615
           R    PQVRH + Q +    E+++K       I    +++ E HR  N  +
Sbjct: 504 RKALHPQVRHSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQS 554


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 109 HIPLIPYPCSWCQCVLTY 56
           H  L+PYPC++  C L +
Sbjct: 138 HTHLLPYPCTYQDCELRF 155


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = +2

Query: 104 NMSSLGISLCYSSWNACSIKASRARYTIF--------PASLVPKDSLRRCGR*LAGHSRG 259
           NMS+ G+++      A SI   R  +  F        P  ++ K ++ +  R   G  R 
Sbjct: 446 NMSATGLNVYKIELVALSILRDRIDFDEFLIDYDADSPTKVIGKRNVSKASRTGQGRKRS 505

Query: 260 SRSSW 274
           SRSSW
Sbjct: 506 SRSSW 510


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 502 QRIKEFKEFLMKHPDTFQIIDDNVVLVSENHRRDNAHTNS 621
           +RI E+ E ++KH D   I +    L  EN   DNA +NS
Sbjct: 492 RRIDEYGE-IIKHQDFSMINEPANTLELENDSDDNALSNS 530


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 224 SLVNPLAPNWQERSCNVRGSPLSS 153
           SL++P +PNWQ+ S       L S
Sbjct: 116 SLIHPTSPNWQDASTTKECEELES 139


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +1

Query: 499 GQRIKEFKEFLMKHPDTFQIIDDNVVLVSENHRRDNAHTNSEHFHNLPVANINTD 663
           G  I   +   +K  DT+ I +      SE + R      SE  HN    N+N D
Sbjct: 59  GSYISPLEAMTVKLADTYSICNPKFQFSSEQNPRRPLTKPSEGVHNHGFDNVNHD 113


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 394  TAWLPRYNHYWRT 356
            TAWLP Y ++W T
Sbjct: 1344 TAWLPHYIYFWIT 1356


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -1

Query: 567 VIYDLERIRVLHEELFELLDALPGDVTHLRGGLAPVTEE 451
           ++  + ++ V+ + L + +  +PGD++H  G      E+
Sbjct: 360 ILPSIPKVSVMDDTLIDSVRGVPGDISHFGGDARYANED 398


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 121 NLTLLFFVERLLDKGEPRTLHDLSCQFGAKGFTK 222
           NL LL F+E      E    ++L+C F A+G+ +
Sbjct: 35  NLRLLDFLEYYPGLSEIGCCNELNCAFAAEGYAR 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,527
Number of Sequences: 5004
Number of extensions: 70587
Number of successful extensions: 185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)