Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N10
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    29   0.48 
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   4.5  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    25   4.5  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.9  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.9  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   7.9  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +1

Query: 160 RKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANITQGGIGFTFVNLRMKSERGNK 339
           R+ V NL   L   PST   S Q + + D+THS  S   +   +G + +   + + + + 
Sbjct: 363 RRSVPNLISSLGTSPSTF--SSQFLKSTDRTHSFTSKLQSFNPVGTSLLASSLGTSQEDS 420

Query: 340 LNYDV 354
           +NYD+
Sbjct: 421 VNYDI 425


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 252 SQHRFR*HHSRWNRVHFR--QSPYEERTRK 335
           S H+FR HHS   RVH R   SP  E +++
Sbjct: 196 SCHQFRLHHSTNLRVHLRCKTSPVIEESKE 225


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 333 SAFALHTEIDESEPDSTLSDVSGSGAVSLII 241
           S+ A  T +DES P+     VSG G  ++++
Sbjct: 7   SSDASSTVMDESPPNGVTKSVSGKGPTAVVM 37


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 170 LRTFITFYPRCHPPLASPFRAFWPMIRLTAPLPLTSLKVE 289
           LRT    Y RC PP+    ++ W  I      PL S+KVE
Sbjct: 53  LRTKFNTYDRCIPPMK---KSLWGWIE-----PLWSIKVE 84


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +1

Query: 127 HHNAKYDAKLFRKRVENLHYVLPQVPSTIGKS 222
           +HNA     +FR   + + Y+ P+  + +G++
Sbjct: 349 YHNAIVRVNIFRDHRQTIQYISPEDSNVLGQA 380


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 220 SIQGILAYDKTHSTASANITQGGIGFTFVNLR 315
           SI+GI  YD     A  + T GGIG    N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,074
Number of Sequences: 5004
Number of extensions: 30408
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)