Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N10
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    30   1.1  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    27   5.9  
11_01_0458 + 3536162-3537794,3537905-3538272                           27   5.9  
03_06_0438 - 33917678-33918084,33929568-33930402,33931055-339313...    27   5.9  
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     27   5.9  
01_06_1733 + 39537618-39537722,39537865-39538028,39539796-395401...    27   7.8  

>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 203 HPPLASPFRAFWPMIRLTAPLPLTSLKV 286
           HP + +  R+FWP   LTA L L  L V
Sbjct: 320 HPVVTALLRSFWPQFLLTAMLGLAHLSV 347


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 174 EPSLRSTPGAIHHWQVHSGHS 236
           EP++R  PG    W  HSG S
Sbjct: 138 EPTIRGIPGQEARWMTHSGSS 158


>11_01_0458 + 3536162-3537794,3537905-3538272
          Length = 666

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 151 KLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANITQGGIGFTFVNLRMKSER 330
           ++F     NLH V+P    ++   IQ  L+Y+  H     +I   G     V+L++ S  
Sbjct: 118 QIFNVLYNNLHGVIPNAIFSLPSLIQVDLSYNNLHGQLPIDI---GNAKQLVSLKLSS-- 172

Query: 331 GNKLNYDV 354
            NKL+ D+
Sbjct: 173 -NKLSGDI 179


>03_06_0438 -
           33917678-33918084,33929568-33930402,33931055-33931335,
           33931358-33931451,33931549-33931857
          Length = 641

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 339 LVSAFALHT-EIDESEPDSTLSDVSGSGAVSLIIGQ 235
           +V+ FALH   +D  EPD  + DV G       +GQ
Sbjct: 574 IVACFALHNFAMDNKEPDMDVHDVFGEDKYLCRLGQ 609


>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 130 HNAKYDAKLFRKRVENLHYVL 192
           HNAK+  +++RK  E  HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301


>01_06_1733 +
           39537618-39537722,39537865-39538028,39539796-39540102,
           39540914-39541221,39541421-39541580
          Length = 347

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 158 SAKGLRTFITFYPRCHPPLASPFRAFWPMIRLTAPL 265
           + +GL+  I  + RCH       +  W ++RL A L
Sbjct: 246 ACRGLQLLIRHFSRCHRTSCPRCQRMWQLLRLHAAL 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,308,679
Number of Sequences: 37544
Number of extensions: 200730
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)