Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_N06
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 146 2e-36
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 31 0.25
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 31 0.25
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 29 0.58
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 29 1.0
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 28 1.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 2.3
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 7.2
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 25 9.5
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.5
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 9.5
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 146 bits (355), Expect = 2e-36
Identities = 83/200 (41%), Positives = 118/200 (59%), Gaps = 7/200 (3%)
Frame = +1
Query: 172 LNAAQLKRLSEHKYSCTSASVLDAW-LQP-WWCWLVSKTPLWLAPNLITILGL---IVNI 336
LN QLK L +KYS S+L + L+P WW L+ P+ +APNLIT++GL ++NI
Sbjct: 3 LNRKQLKNLHNYKYSAIDNSLLSKYILKPYWWNQLLKVIPMSMAPNLITLIGLGFVVINI 62
Query: 337 VTTLILVW-YSPDARQDPPRWACALCALGVFVYQSLDAIDGKQARRTGSQSPLGELFDHG 513
+T L+ + Y DA P W A A+G+F+YQS DAIDG QARRTG+ SPLG+LFDHG
Sbjct: 63 LTMLVYKYHYEMDAF---PSWVYASWAIGLFLYQSFDAIDGSQARRTGTSSPLGQLFDHG 119
Query: 514 CDSISTVFIALGACIAVKLGEYPTWMFFQCFCAMTLFYCAHWQAYVTGTLXMGRI-XVTE 690
D+I+T F L ++L + + F ++ FY + W+ Y TGTL + E
Sbjct: 120 VDAINTSFEVLLTIELLQLDMFSS--ILTQFASLLYFYISTWEEYHTGTLYLSYFSGPVE 177
Query: 691 AXFSIIGIHIISAVLGPDFW 750
+IG+ ++A+ G FW
Sbjct: 178 GIVMVIGLFALTAIKGDSFW 197
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 190 KRLSEHKYSCT-SASVLDAWLQPWWCWLVSKTPLWLAPNLITILGLIVNIVTTLILVWYS 366
+RL ++ S + AS+L LQ W ++ K P W A + L ++ I+ +L W
Sbjct: 108 ERLEQYMESSSLDASILPKNLQQWRVYIEHKAPCW-AILAVVDLATVLEILESL-SSWLE 165
Query: 367 PDARQDPPRWACALC 411
DA +W C
Sbjct: 166 KDAIDLQSQWIFCFC 180
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 190 KRLSEHKYSCT-SASVLDAWLQPWWCWLVSKTPLWLAPNLITILGLIVNIVTTLILVWYS 366
+RL ++ S + AS+L LQ W ++ K P W A + L ++ I+ +L W
Sbjct: 108 ERLEQYMESSSLDASILPKNLQQWRVYIEHKAPCW-AILAVVDLATVLEILESL-SSWLE 165
Query: 367 PDARQDPPRWACALC 411
DA +W C
Sbjct: 166 KDAIDLQSQWIFCFC 180
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.58
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +1
Query: 394 WACALCALGVFVYQSL-DAIDGKQARRTGSQSPLGELFDHGCDSISTVFIALGACIAVKL 570
W C + V++Y SL DA DG AR+ + G + D D +T + C A
Sbjct: 50 WHPNYCTI-VYLYSSLLDAFDGWAARKLHQATNFGAILDMVTDRCATSCLLCFLCAA--- 105
Query: 571 GEYPTW-MFFQCFCAMTLFYCAHWQAYVTGTLXMG 672
YP + + FQ ++ L +H+ ++ TL G
Sbjct: 106 --YPKYAIIFQLLVSLDL--ASHYM-HMYSTLHQG 135
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -3
Query: 293 SHKGVFDTSQH--HHGWSHASRTLALVQEYLCS-LSLFNCAALSILSL*NCIFITLS 132
S K +FD H G S+ASR++ E+LC+ + N AA S+ + +TLS
Sbjct: 193 SDKSLFDLFGFYCHAGHSYASRSIDAASEFLCAEIDAANTAAKFATSIDPSLKLTLS 249
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = -3
Query: 308 MRFGASHKGVFDTSQHH-HGWSHASRTLALVQEYLCSL-SLFN 186
++F A ++ V S+ GW +++T+ALV+EY+ + LFN
Sbjct: 995 LKFDARNQKVLGFSRKSTKGWEFSNKTVALVKEYINTFPQLFN 1037
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 288 MASSESHHNFRSNCKYSNHAYISMVQS*CQTRPTKMGMCSVRLRCLC 428
+ + S ++FR C SN +++ + Q+ CQ + L+C+C
Sbjct: 893 LTAIHSQYSFRGYCSSSNQSFLELSQTECQRLDAWENENEI-LQCVC 938
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 526 STVFIALGACIAVKLGEYPTWMFFQCFCAMTLFYCAH 636
S +F L + V L YP + F+ ++LFYCA+
Sbjct: 48 SIIFSFLYLLLIVPLFLYPEYWAFKLVELLSLFYCAY 84
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -2
Query: 759 LSGPEVGSEDSGYYMYADNR-EXSLGHVYPTHXQRPRYVGLPVCAVE--QSHRTETLK 595
+S P + SEDSG+ + N+ E +L + + R++G + +E Q H + LK
Sbjct: 628 VSFPTLASEDSGFIAHRKNQFEENLHKLEEERYEYDRHIGANMRFIELLQIHADKMLK 685
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 564 QARRVSNLDVLSVFLCDDSVLLRTLASLRNG 656
+++ +SN VL LCD S L + L++G
Sbjct: 71 ESQPISNFPVLQYILCDKSSLQEKQSRLKSG 101
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 208 KYSCTSASVLDAWLQPWW 261
+Y C A VL W +PW+
Sbjct: 472 EYVCPFADVLGRWYEPWF 489
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 558 NTSTQSYEHSGYA--VTSMIKQFSQRRLTACPSCLFTINGIQALINKDT*GAQSTCPSWW 385
NTS QSY V +I+ + R+L++ G+ NKD TC ++W
Sbjct: 219 NTSNQSYNLMDCVPKVERLIRWLASRQLSS--------GGLNGRTNKDV----DTCYAYW 266
Query: 384 VLSGIR 367
VLS ++
Sbjct: 267 VLSSLK 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,600
Number of Sequences: 5004
Number of extensions: 63467
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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