Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_N06
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528... 105 5e-23
02_01_0145 + 1040798-1040934,1041152-1041194,1041999-1042076,104... 36 0.038
12_02_1279 + 27510605-27513301 32 0.61
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551... 31 1.4
02_02_0327 - 8983983-8985878 30 1.9
09_03_0051 + 11902322-11903125 29 3.3
07_03_1046 - 23531218-23532638,23532781-23532868 29 3.3
05_01_0323 - 2545281-2545784 29 4.3
03_02_0452 + 8611920-8612156,8612658-8612759 29 4.3
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 29 5.7
03_03_0032 + 13927959-13930040,13930322-13930798 29 5.7
05_02_0062 + 6251192-6251803 28 7.5
>06_01_0723 -
5287864-5287885,5287971-5288043,5288521-5288626,
5288829-5288891,5290165-5290249,5290337-5290377,
5291260-5291323,5291647-5291716,5291886-5291960,
5292070-5292164,5293671-5293771,5293852-5293874,
5293956-5294031,5294229-5294322,5294493-5294548,
5296204-5296327,5296607-5296743
Length = 434
Score = 105 bits (251), Expect = 5e-23
Identities = 58/151 (38%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Frame = +1
Query: 304 LITILGLIVNIVTTLILVWYSPDARQDPPRWACALCALGVFVYQSLDAIDGKQARRTGSQ 483
+ ++ ++ V LI YSP PPRW L +F+YQ+ DA+DGKQARRT S
Sbjct: 94 MFLVVSALLGYVRILISQIYSPHLDTAPPRWVHLAHGLLLFLYQTFDAVDGKQARRTSSS 153
Query: 484 SPLGELFDHGCDSISTVFIALGACIAVKLGEYPTWMFFQCFCAMTLFYCAHWQAYVTGTL 663
SPLGELFDHGCD+++ F AL + G + T+ F+ A FY A W+ + T TL
Sbjct: 154 SPLGELFDHGCDALACAFEALALGSTLMCGRF-TFCFW--VIAAVPFYLATWEHFFTNTL 210
Query: 664 XMGRI-XVTEAXFSIIGIHIISAVLGPDFWS 753
+ I TE I H + + G ++W+
Sbjct: 211 ILPLINGPTEGLMLIYLSHSFTFLTGAEWWA 241
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 172 LNAAQLKRLSEHKYSCTSASVLDAW-LQPWWCWLVSKTPLWL 294
+ A ++ L ++YS SV+ + LQP+W V+ PLW+
Sbjct: 4 IGAHGVETLKRYRYSGQDHSVVAKYVLQPFWSRCVTLFPLWM 45
>02_01_0145 +
1040798-1040934,1041152-1041194,1041999-1042076,
1042444-1042544,1042900-1042994,1043161-1043229,
1043432-1043501,1043757-1043820,1043907-1043947,
1044098-1044182,1044608-1044682
Length = 285
Score = 35.9 bits (79), Expect = 0.038
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 196 LSEHKYSCTSASVLDAW-LQPWWCWLVSKTPLWLAPNLITILGLIVNIVTTLILVWYSPD 372
L +KYS S++ + LQP+W V+ PLW + I+ + +YSP
Sbjct: 12 LRRYKYSGVDHSLVAKYILQPFWSRFVNLFPLWFPDSSIS------SFFFDSFNWFYSPH 65
Query: 373 ARQDPPRWACALCALGVFVYQ 435
PPRW + +F+YQ
Sbjct: 66 LDTAPPRWVHLAHGMLLFLYQ 86
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 592 FFQCFCAMTLFYCAHWQAYVTGTLXMGRI-XVTEAXFSIIGIHIISAVLGPDFWS 753
F+ F A FYCA W+ + T TL + + TE I H + G ++W+
Sbjct: 103 FWYWFIAAVPFYCATWEHFFTNTLILPIVNGPTEGLMLIYLCHFFTFFTGAEWWA 157
>12_02_1279 + 27510605-27513301
Length = 898
Score = 31.9 bits (69), Expect = 0.61
Identities = 26/84 (30%), Positives = 36/84 (42%)
Frame = +1
Query: 274 SKTPLWLAPNLITILGLIVNIVTTLILVWYSPDARQDPPRWACALCALGVFVYQSLDAID 453
S+TP+W A TIL IV +T L PD D W+ V + LD
Sbjct: 91 SRTPVWTATAGTTILQSIVLSLTAQGLALSDPDPAAD-YAWSTPRLRAPVAALRLLDT-- 147
Query: 454 GKQARRTGSQSPLGELFDHGCDSI 525
G+ A + + L FDH D++
Sbjct: 148 GELALLDAANATLWSSFDHPTDTL 171
>02_04_0453 +
23053621-23054167,23054867-23054958,23055085-23055149,
23058558-23059086
Length = 410
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 529 WICCHIHDQTILPKEIDCLSVLLVYHQWHPGSDKQR 422
W C T+LP E +C+ ++L W P ++R
Sbjct: 300 WSTCDASHSTVLPYERECVEIILSSSLWGPHKARRR 335
>02_02_0327 - 8983983-8985878
Length = 631
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 593 NIQVGYSPSLTAIQAPKAMNTVDMLSHP*SNNSPKG 486
N VG P ++ + P A + +D+L+H S N P+G
Sbjct: 17 NAYVGKFPVISTVSHPTASSQIDVLAHCSSYNLPRG 52
>09_03_0051 + 11902322-11903125
Length = 267
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +1
Query: 253 PWWCWLVSKTPLWLAPNLITILGLIVNIVTTLILVWYSPDARQDPPR 393
PWW W P WL P +++N+V + V S PR
Sbjct: 4 PWWWWW--PLPAWLMPGSTAAWFVVLNVVVCAVAVLSSRARESLSPR 48
>07_03_1046 - 23531218-23532638,23532781-23532868
Length = 502
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 325 IVNIVTTLILVWYSPDARQDPPRWACALCALGVFVY 432
+V + T L +V SPDA+ P WA LC + Y
Sbjct: 352 LVGLATGLTVVGGSPDAQV--PSWAVGLCVASILAY 385
>05_01_0323 - 2545281-2545784
Length = 167
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 253 PWWCWLVSKTPLWLA 297
PWWCW K P+ A
Sbjct: 111 PWWCWAAEKAPVTAA 125
>03_02_0452 + 8611920-8612156,8612658-8612759
Length = 112
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 798 QSHR-VADXESTTDLSGPEVGSEDSGYYMYADNREXSLGHVYPTHXQRPRYVGLPV 634
Q HR + D T+ +SG E S SG+ M D + S P +RP + P+
Sbjct: 13 QQHRALTDDVDTSSMSGRERESSRSGWRMLMDEAKESKRPSMPIRRRRPVVLEAPL 68
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 374 ASGLYHTNISVVTIFTIRPKIVMRFG--ASHKGVFDTSQHHHGWS 246
++G+ TN++ F + ++ G ++ F +S HHHGWS
Sbjct: 138 STGIGPTNLTDTPFFFSKRNTLVATGCYSNFTATFTSSLHHHGWS 182
>03_03_0032 + 13927959-13930040,13930322-13930798
Length = 852
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 254 GWSHASRTLALVQEYLCSLSLFNCAALSILSL 159
GW S+ + + +L LS F C ALS++ L
Sbjct: 229 GWVFVSKKIGRLLNWLQVLSAFTCVALSVMRL 260
>05_02_0062 + 6251192-6251803
Length = 203
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 475 LSVLLVYHQWHPGSDKQRHLRRTEHMP 395
LS L +H+WHPG K R + + P
Sbjct: 38 LSDFLAFHRWHPGVAKCRRVSGSPRSP 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,060,979
Number of Sequences: 37544
Number of extensions: 450488
Number of successful extensions: 1499
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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