Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N04
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...   113   1e-25
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...   113   1e-25
Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc...    29   5.0  
Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score =  113 bits (273), Expect = 1e-25
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 7/215 (3%)
 Frame = +1

Query: 139 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 318
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 319 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 489
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 490 RVHYH-DPGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 660
           +  Y  +  +  WGEHE+D+ L  +         N +E++E   V   E   ++      
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNS 199

Query: 661 ITPWFNMI-RRHRLKLWWDNLHRIKELAEPXKIQK 762
            TPW  +  +    + WW      +E  E   I K
Sbjct: 200 FTPWLKLFSQTETFEKWWTINKNTEESIEDTNIYK 234


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score =  113 bits (273), Expect = 1e-25
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 7/215 (3%)
 Frame = +1

Query: 139 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 318
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 319 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 489
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 490 RVHYH-DPGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 660
           +  Y  +  +  WGEHE+D+ L  +         N +E++E   V   E   ++      
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNS 199

Query: 661 ITPWFNMI-RRHRLKLWWDNLHRIKELAEPXKIQK 762
            TPW  +  +    + WW      +E  E   I K
Sbjct: 200 FTPWLKLFSQTETFEKWWTINKNTEESIEDTNIYK 234


>Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical
           protein C33D9.3b protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -3

Query: 254 STSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWAN-SRPSLSRVAGFTGSEA-KK 81
           + SP   T      +  P   SFSSTSR+   SK+S  A+ +R   S +   T S+  KK
Sbjct: 57  TVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNTYSDCEKK 116

Query: 80  SFLD 69
            FLD
Sbjct: 117 HFLD 120


>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl
           cyclase protein 19 protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = -3

Query: 200 MKLSFSSTSRQISLS-----KASAW---ANSRPSLSRVAGFTGSEAKKSFLDS*GA 57
           M L++S     +S+S     +AS W      RP    V GF G++  +SF+D  GA
Sbjct: 405 MNLTYSLNGGAVSVSLAYTNEASLWYWYGGKRPLSVPVCGFAGTDCPQSFVDQYGA 460


>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical
           protein T03D8.5 protein.
          Length = 1012

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 143 WANSRPSLSRVAGFTGSEAKKSFLD 69
           W  + P  + + GFTG++  KSF D
Sbjct: 396 WGGTVPLSTPICGFTGTDCPKSFTD 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,041,300
Number of Sequences: 27780
Number of extensions: 424329
Number of successful extensions: 1168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)