Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N03
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    28   0.12 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 567 EFTAPKLYFRPDDKLILGGT-FLHTDSHHIWLFSLVL 674
           E+   KL + PDD    GG   LH  S HIWL  +VL
Sbjct: 76  EWNDYKLKWNPDD---YGGVDTLHVPSEHIWLPDIVL 109


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 618 GGTFLHTDSHHIWLFSLVL 674
           G T L+  S HIWL  +VL
Sbjct: 91  GVTELYVPSEHIWLPDIVL 109


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 600 DDKLILGGTFLHTDSHHIWLFSLVL 674
           D K   G   LH  S HIW   +VL
Sbjct: 89  DPKEYGGVEMLHVPSDHIWRPDIVL 113


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 130 FIEKINPILYNV 95
           F   INPILYNV
Sbjct: 307 FSTTINPILYNV 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,353
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)