Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_N02
         (831 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45114| Best HMM Match : RasGEF (HMM E-Value=3.7e-24)                29   4.6  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)              29   4.6  
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  

>SB_45114| Best HMM Match : RasGEF (HMM E-Value=3.7e-24)
          Length = 315

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 354 FAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFD----DQVPEDTRTFDHVNFNQNPNH 521
           FAA++   LG+K   +  M++       VD  SFD     Q+ E     +H+ F++ P H
Sbjct: 32  FAAAIIRTLGIKQGQKGPMEMDLAPDEQVDPNSFDKISSSQLAEQLTFVEHLLFSRVPAH 91


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 303 NSKVIIVEGPVAAGKTAFAASLADDLGMK 389
           NS +++V GPV  GKT+  +++  +L ++
Sbjct: 440 NSDLVLVTGPVGCGKTSLLSAILGELSVR 468


>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
          Length = 899

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 354 FAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFD----DQVPEDTRTFDHVNFNQNPNH 521
           FAA++   LG+K   +  M++       VD  SFD     Q+ E     +H+ F++ P H
Sbjct: 812 FAAAIIRTLGIKQGQKGPMEMDLAPDEQVDPNSFDKISSSQLAEQLTFVEHLLFSRVPAH 871


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 617  NSLASIEQVCQSINILTVPGHIHHYLEVCS-QAMVRILIEINMVKGPSVLGYLVVEGPQI 441
            NS+ +++++  S N LT    ++H L +    A    L  +  VKG S LGYL V   Q+
Sbjct: 889  NSMTALKRLIVSFNELTRLEDVNHMLFLEHLDASFNKLTTLEGVKGCSRLGYLDVSWNQL 948

Query: 440  DAVRTNI 420
               R  +
Sbjct: 949  QYTREEL 955


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,068,576
Number of Sequences: 59808
Number of extensions: 490202
Number of successful extensions: 1160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)