Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_M24
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481...    32   0.21 
11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577...    29   2.0  
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990...    28   3.5  
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976...    27   6.0  
06_02_0276 + 13678457-13678734,13679592-13679931,13680025-136802...    27   8.0  

>01_06_1656 +
           38946922-38947542,38947640-38947739,38948045-38948189,
           38948868-38948991,38949443-38949960,38950111-38950458,
           38950557-38950638,38951309-38951707,38951790-38951927,
           38952063-38952108,38952200-38952369
          Length = 896

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 277 KNQKKQVXMPKKKNASEKTGLSLQXRKHRDAELMREXQRKKEEE 408
           + +K++  M K++   ++  L  Q R+ ++   M++ QRK+EEE
Sbjct: 347 QKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEE 390



 Score = 29.9 bits (64), Expect = 0.86
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 232 LIRMTRGNQRDLARAKNQKKQVXMPKKKNASEKTGLSLQXRKHRDAELMREXQRKKEE 405
           L + T  N++D  +A+   KQV    K+   E+  +  Q +K ++  L  + +R+KEE
Sbjct: 323 LQKNTSTNEKDTQKAQ---KQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEE 377



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +1

Query: 277 KNQKKQVXMPKKKNASEKTGLSLQXRKHRDAELMREXQRKKEEE 408
           + +K++  M K++   E+     Q R+ ++    R+ Q+K++EE
Sbjct: 372 RREKEEAEMKKQQRKQEEEAQKEQKRREKEEAETRKQQKKQQEE 415


>11_01_0701 -
           5774234-5774404,5774456-5774456,5774558-5774763,
           5775157-5775303,5775423-5775628,5776391-5776580
          Length = 306

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 250 GNQRDLARAKNQKKQVXMPKKKNASEKTGLSLQXR--KHRDAELMREXQRKKEEE 408
           GN+RDL +  N K    M K K A +K     + R  K     L RE +RK E++
Sbjct: 250 GNERDL-KDSNVKWNSNMKKLKKARKKRLKRAEKRRLKREKKRLKREEKRKSEDQ 303


>04_04_0596 -
           26497863-26497913,26498010-26498081,26499015-26499093,
           26499440-26499553,26499822-26499871,26500353-26500398,
           26501100-26501719
          Length = 343

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 313 KNASEKTGLSLQXRKHRDAELMREXQRKKEEELA 414
           KNA           + R  EL+RE +R+KEEE+A
Sbjct: 260 KNALGTERTVFNDEEQRRLELLRERERQKEEEVA 293


>07_03_0873 +
           22194172-22195434,22195534-22195670,22197531-22197639,
           22197739-22197865,22197952-22198012,22199332-22199722
          Length = 695

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 146 GRDLGQRTALHFTNRSKIGKKTFSNN*RIQ 57
           G+  GQRTA+H  +   +G+  F++  R+Q
Sbjct: 651 GKMRGQRTAMHRMSLPSVGRSGFTDGRRLQ 680


>06_02_0276 +
           13678457-13678734,13679592-13679931,13680025-13680243,
           13680328-13680420
          Length = 309

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 109 PIGVKLEKKLLAIISVYNTKATHRRQPAGHNP 14
           P G+  E KL   +  YN  +T+   P  HNP
Sbjct: 271 PKGILKETKLSGFVPKYNDFSTNILFPTNHNP 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,287,003
Number of Sequences: 37544
Number of extensions: 188770
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)