Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_M22
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0239 + 22244565-22245144,22245249-22245594,22246847-222468...    31   1.6  
10_08_0981 - 22011702-22011889,22012008-22012112,22012461-220126...    30   2.1  
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210...    30   2.1  

>03_05_0239 +
           22244565-22245144,22245249-22245594,22246847-22246868,
           22246982-22247054,22247131-22247233,22247312-22247366,
           22247448-22247542,22247913-22248204,22248292-22248495,
           22248583-22248615
          Length = 600

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 412 GHGVNSRGQCSGRRPSRDCKTTL 344
           GHG  S+  C GRR S DC T L
Sbjct: 485 GHGCWSKSYCDGRRGSPDCGTML 507


>10_08_0981 -
           22011702-22011889,22012008-22012112,22012461-22012604,
           22012699-22013080,22013567-22013671,22013775-22013897,
           22014146-22014235
          Length = 378

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/76 (31%), Positives = 31/76 (40%)
 Frame = -3

Query: 718 RGA*LSNCTNDVHFLFXCHSLNYVSQQTECIASIVLRGLLCFCMPCARRSLLHCEAVFPS 539
           RGA +     DV       + N +   +   ASI    +L  C+PC R   L   AVFP 
Sbjct: 236 RGAAVLKLRADVSRGISSSTSNSMMMMSTNTASIQKGTILRVCLPCGRLR-LRTVAVFPE 294

Query: 538 KNDI*CRFGAHRLDSA 491
              +  R G  RL  A
Sbjct: 295 CGTVALRLGKKRLHGA 310


>02_01_0314 +
           2106976-2107658,2107792-2107931,2108367-2108636,
           2109938-2110254
          Length = 469

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = -3

Query: 469 SCFRAVAAFERRKRSPFRKGHGVNSRGQCSGRRPSRDCKTTLSYRFSQLSYPCIR*RSSF 290
           S F  +A F+++KRS  R+ H  N+R     R+P  +  +  S R S L Y   R ++SF
Sbjct: 227 SRFHGLAEFDQKKRSCRRRLHDHNAR----RRKPQPEAISLSSSRLSTLLYGDARQQASF 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,212,272
Number of Sequences: 37544
Number of extensions: 473584
Number of successful extensions: 1198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)