Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_M12
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 29 0.65
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 28 1.5
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 28 1.5
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma... 28 2.0
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 27 3.5
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 3.5
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 4.6
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 26 6.0
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 6.0
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 26 8.0
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 29.5 bits (63), Expect = 0.65
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 495 FGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYAC-MMMFFLANMIEGQLISSGAF 671
F +++ I +G+ IF+WL W LYA ++ F + G ++S+
Sbjct: 311 FSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVL 370
Query: 672 EISLNN 689
+I+ ++
Sbjct: 371 DIAFHD 376
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 246 MLLVCTLLFTLTHINADSDE---GSISKIGTSVGHTMNIYYCYSCG 374
+LL C +LF +T + S SI I T +G ++YYC++ G
Sbjct: 515 ILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHG 560
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 32 WFLKFLKPISXXLYFVLFLFITKLK 106
W+LK+L P S + + FL I+KL+
Sbjct: 337 WWLKYLGPFSYLILYYFFLDISKLQ 361
>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 450 YDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMM 617
Y+ GF MYL ++GFG +V + V F ++ WW+ + L+ ++
Sbjct: 7 YEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIPTWLFVLVI 62
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 777 LETAGYYLLFETIQMVAGFFQSLFWTKV 694
L T+G+Y I A FFQSL W +
Sbjct: 372 LLTSGWYRYARKIHYTADFFQSLSWALI 399
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 690 CC*EISQKLQRILAVLQSYLLKRTSSCMHTACFQGTNSTKQVVVCST 550
CC E +K + L V+ +L S C FQ T Q +V +T
Sbjct: 650 CCYEGDEKDEERLTVISEFLKSCFSGCQDRRSFQITMEDFQAIVDTT 696
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 209 YQYVKQYVLPKRDVTRLYFIIYTNSYQ 289
++ + YV+PKR++ + TN YQ
Sbjct: 57 FETISDYVIPKRELCNKTITVCTNHYQ 83
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 705 KIETGRIPQPSELFQIIDNTLQFLKWTSRKTFLYNP 812
K+ R +PS+ Q+ D +++L TSR FL P
Sbjct: 11 KLVKARNGKPSKQVQLSDAEIRYLCTTSRSIFLSQP 46
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 6.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 491 WFWQNVGHHVYTQRCEY 541
W WQN+G YT+ C++
Sbjct: 75 WNWQNLGISRYTKDCDF 91
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 468 NMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAW 575
N Y+ +GF ++ +LSG I LN P AW
Sbjct: 46 NWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAW 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,736,624
Number of Sequences: 5004
Number of extensions: 84368
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -