Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_M09
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   181   6e-47
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.17 
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   3.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   4.8  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   6.3  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   8.3  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  181 bits (441), Expect = 6e-47
 Identities = 88/174 (50%), Positives = 116/174 (66%), Gaps = 2/174 (1%)
 Frame = +1

Query: 58  IEXAGIPKXXIKXVYIGNVCSANLGQAPAXQAVIFAGLPKSTICTTVNKVCASGMKSIML 237
           +E   I    +  V++GNV SANLGQ PA Q  + AGLP+S +CTTVNKVCASGMK+ +L
Sbjct: 40  LERVNIKPSDVDEVFMGNVVSANLGQNPARQCALGAGLPRSIVCTTVNKVCASGMKATIL 99

Query: 238 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHM 411
            AQ + TG  +I++AGG ESMSN P+Y  +      YG ++LVDG++ DGL+D Y+   M
Sbjct: 100 GAQTIMTGNAEIVVAGGTESMSNAPYYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPM 159

Query: 412 GNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP 573
           GN AE  A++  I R  QD +A++SYKR+  A   KAF  E+VPV VP  RG P
Sbjct: 160 GNAAELCAEEHSIDRASQDAFAISSYKRAQNAQATKAFEQEIVPVEVPVGRGKP 213


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 193 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 306
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 153 CNICRFAKKYHMYNCKQSMC 212
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 389 MCTTNFTWEIVLKTQQKNYKLLDKIKMNMLSIVTREV 499
           +  + + W +  KT++  YKL+    M + S+V  E+
Sbjct: 409 IAASGYVWHVGSKTERSRYKLMLDCVMIITSVVPSEL 445


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 228 RFHARGTYFVYSCTYGTF 175
           RF  R  Y +YSC YG+F
Sbjct: 467 RFLRRLLYHLYSCQYGSF 484


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 163 AGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 315
           AG P   I T V K      + + +A +    GA+ IILAGG ++++ + +
Sbjct: 154 AGCPHVVISTPVRKDGTVAPEIVYIANK---IGAEAIILAGGAQAIAAMAY 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,957
Number of Sequences: 5004
Number of extensions: 42448
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)