Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_M08
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 34 0.013
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 1.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 2.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 2.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 4.7
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 6.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.2
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 8.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 8.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.9 bits (74), Expect = 0.013
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 146 NQDVARSPAEVPNDPGKMFVGGLSWQTSPGKSSKDISEE 262
N+D A + + GKMF+GGL+W+T+ S +D E+
Sbjct: 148 NEDNAEETSPFNREDGKMFIGGLNWETT-DDSLRDYFEQ 185
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.1 bits (57), Expect = 1.5
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 56 EPSPTAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPG---KMFVGGLSWQT 226
+PS T+ RS +V S + APS + A S P+ P K+ LS +
Sbjct: 593 KPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETSRLSTKK 652
Query: 227 SPGKSSKDIS 256
PG + K S
Sbjct: 653 LPGSTMKAAS 662
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 367 GLIFILLALVNFVRETSTPQRLSHVAA 287
G+ FIL+A+ +F ++T+ + H+AA
Sbjct: 2005 GISFILVAITHFFQKTTACSVIQHIAA 2031
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 59 PSPTAYRSIVVVVP--TGSHRVPAPSPMETQNQDVARSPAEVPNDPG 193
P P+ S P + S PAP+P +QN+ +P P G
Sbjct: 62 PPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGG 108
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 320 INPTAAQSRGRKETALLSFAPQRCLSTIY 234
I+P AA S T L+F P+ CL Y
Sbjct: 955 IHPAAAMSFSDGSTTNLAFEPRDCLQLYY 983
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 213 SAGRLVQVNRRKTSLRSKGKQRGLFAAT 296
S RL+ V+ KTS K K+ GL +AT
Sbjct: 383 SNDRLILVDDEKTSWIYKNKESGLISAT 410
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 8.2
Identities = 15/63 (23%), Positives = 23/63 (36%)
Frame = +2
Query: 119 PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSLCGHV 298
PAPS V++ P VPN P + ++ Q + ++S HV
Sbjct: 1470 PAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHV 1529
Query: 299 TEP 307
P
Sbjct: 1530 PSP 1532
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 8.2
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +2
Query: 8 PMSLVPVVG--SAAERLR--EPSPTAYRSIVVVVPTGSHRVPA---PSPMETQNQDVARS 166
P +++P+ G SA + ++ EPS A ++IV P P ET Q V ++
Sbjct: 528 PRNIMPLPGLMSADQPIKVTEPSNDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKT 587
Query: 167 PA 172
P+
Sbjct: 588 PS 589
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 24.6 bits (51), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 65 PTAYRSIVVVVPTGSHRVPAPSPMETQNQDVARS 166
PTA +S PT S+ V +PS + NQ+ S
Sbjct: 226 PTAMKSQSTTKPTLSNSVSSPSIQVSNNQNANNS 259
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 24.6 bits (51), Expect = 8.2
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 98 PTGSHRVPA--PSPMETQNQDVARSPAEVPN-DPGKMFVGGLSWQTSPGKSSKDISEEQR 268
PT R P+ PSPM ++ + VAR+ P+ K F G S ++ K+ E +
Sbjct: 199 PTCEKRKPSRSPSPMLSKKKSVARASENEPSAKQNKSFSGNDSHKSLTDIRDKENGETEV 258
Query: 269 KA 274
A
Sbjct: 259 SA 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,564
Number of Sequences: 5004
Number of extensions: 30757
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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