Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_M08
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 31 0.68
SB_31658| Best HMM Match : Arm (HMM E-Value=0.91) 30 0.90
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45) 29 1.6
SB_9781| Best HMM Match : MarC (HMM E-Value=8.8) 29 1.6
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_51973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05) 29 2.1
SB_11360| Best HMM Match : PDZ (HMM E-Value=0) 29 2.8
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13) 28 3.6
SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017) 27 6.4
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_43153| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 27 8.4
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 31.5 bits (68), Expect = 0.39
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +2
Query: 14 SLVPVVGSAAERLREPSPTAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSP-----AEV 178
S++ + S + L E SP + I V+ + H SP +T P
Sbjct: 98 SIMTYMASLCDSLGENSPKKVKPIAPVIQSAKHTGKDGSPDKTFRDRTPSPPKPSARTSA 157
Query: 179 PNDPGKMFVGGLSWQTSPGKSSKDISEEQRKAA 277
P+ P +W+ SP KSSK S ++++A
Sbjct: 158 PSSPSP--TKHPTWEASPEKSSKAPSTSKKQSA 188
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 30.7 bits (66), Expect = 0.68
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +2
Query: 50 LREPSPTA-YRSIVVVV----PTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGL 214
+ +P+P+A + S VVV+ P G APSP + + V +P + P+ K
Sbjct: 248 ISQPTPSASHDSDVVVIADNAPAGGLVTAAPSPPDKKQSSVCHTPPKTPS--SKTTPADA 305
Query: 215 SWQTSPGKSSKDISEEQRK 271
+TSP +S ++ R+
Sbjct: 306 ETKTSPSTTSPQTNKALRQ 324
>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
Length = 249
Score = 30.3 bits (65), Expect = 0.90
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 55 GAVPDRVSLDRSRSADRLAPRAGPEPHGDP 144
GAVP VSL R SA++L HGDP
Sbjct: 144 GAVPPLVSLLRDNSAEQLDHHLSHRSHGDP 173
>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
Length = 936
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 204 TNIFPGSLGTSAGLRATSWFWVSMG 130
TN+ PG++ + G+R S FWV +G
Sbjct: 340 TNVPPGAITSINGMRVLSMFWVILG 364
>SB_9781| Best HMM Match : MarC (HMM E-Value=8.8)
Length = 430
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 204 TNIFPGSLGTSAGLRATSWFWVSMG 130
TN+ PG++ + G+R S FWV +G
Sbjct: 326 TNVPPGAITSINGMRVLSMFWVILG 350
>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1371
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 104 GSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSPGKSSKDISEEQRKA 274
G++ PME + A S + + N P K+ L PGK + ++ +E A
Sbjct: 214 GNNDTNPEEPMEAETNGAASSCSSLENAPAKVKTEVLDTSQDPGKIADEVIDELMSA 270
>SB_51973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 186 TRGRCSSEDSAGRLVQVNRRKTSLRSKG---KQRGLF 287
T R +EDS+ +LVQ+ R + S+R G KQR LF
Sbjct: 20 TNLRPMAEDSSKKLVQIRRMEYSIRKNGIGKKQRFLF 56
>SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)
Length = 899
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 226 SLPAESSDEHLPRVVRHLCGASGHILVL 143
++P SDE R++R++CG HI ++
Sbjct: 42 TVPLSYSDEDKERIIRYICGNEEHIALI 69
>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
Length = 625
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +2
Query: 59 PSPTAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGK-MFVGGLSWQTSPG 235
PSP PT APSP +N +V P E P P L +T
Sbjct: 114 PSPPTLPKQTPPPPTPEVIETAPSPSPGENGEVNHVPPESPVPPASPQSTNSLPKKTPAV 173
Query: 236 KSSKDISEEQRK 271
D + E+RK
Sbjct: 174 PEDDDFTREERK 185
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 2 GRPMSLV---PVVGSAAERLREPSPTAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPA 172
G P SL+ P+ S + +PSP+ S + P+ S PSP T + SP+
Sbjct: 1244 GSPSSLISYKPIKPSPSTTPIKPSPST-TSTTPIKPSPSTNPIKPSPSTTSTTPIKPSPS 1302
Query: 173 EVPNDP 190
P P
Sbjct: 1303 TTPIKP 1308
>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
Length = 557
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 62 SPTAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGG 211
+PT+ + V++PTG+ A SP Q V S EV +D GK +GG
Sbjct: 37 TPTSTTEVAVIMPTGASTRCAISP---HLQGVKLS-VEVWDDDGKNIIGG 82
>SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)
Length = 759
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 59 PSPTAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPG 193
P PT Y S + + AP+P T +PA +P DPG
Sbjct: 687 PCPTQYSSTQMSQESTFQGQAAPTPRTTPADFGLGTPALIPPDPG 731
>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1297
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 99 GTTTTIERYAVGDGSRSRSAALPTTGTRLIGR 4
GTTTT G G+ AA TTGT L G+
Sbjct: 377 GTTTTQAGGLFGGGATGFGAATGTTGTGLFGQ 408
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 286 LRPRD*AAVGLMFLGQNLPTLTK*K*DLRDFSEKRTDPINVDH 414
L P D VG F G+ +PT+ + K D++DF T +N ++
Sbjct: 143 LYPYDIFQVGA-FTGEAVPTVEQMKKDVKDFEYTPTQTLNTNY 184
>SB_43153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.1 bits (57), Expect = 8.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 228 LVCQLSPPTNIFPGSLGTSAGLRATSWFWVSMGL-GAGTRCEPVGTTTTIERYAVGDGSR 52
L ++P T P + TS +AT+ V+ GL GAGT T TT+ + G+
Sbjct: 161 LAMAVTPVTK--PAEVITSTETKATAD--VTSGLFGAGTSLSNAETKTTVPLFGTGETKV 216
Query: 51 SRSAALPTTGTRLIGRP 1
++ P G + P
Sbjct: 217 VKNEEKPFAGLATLSAP 233
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTS 229
+D GK+FVGGLS++T+
Sbjct: 26 DDIGKLFVGGLSYETT 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,773,011
Number of Sequences: 59808
Number of extensions: 258388
Number of successful extensions: 977
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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